Kristoffer Sahlin

According to our database, Kristoffer Sahlin authored at least 11 papers between 2012 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2023

isONform: reference-free transcriptome reconstruction from Oxford Nanopore data.

Alexander J. Petri, Kristoffer Sahlin

Bioinform., 2023

2022

Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAG.

Manuel Cáceres, Brendan Mumey, Edin Husic, Romeo Rizzi, Massimo Cairo, Kristoffer Sahlin, Alexandru I. Tomescu

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

2021

Accurate spliced alignment of long RNA sequencing reads.

Kristoffer Sahlin, Veli Mäkinen

Bioinform., 2021

2020

De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based Algorithm.

Kristoffer Sahlin, Paul Medvedev

J. Comput. Biol., 2020

Chaining with Overlaps Revisited.

Veli Mäkinen, Kristoffer Sahlin

Proceedings of the 31st Annual Symposium on Combinatorial Pattern Matching, 2020

2017

Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias.

Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad

J. Comput. Biol., 2017

2016

Gap Filling as Exact Path Length Problem.

Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu

J. Comput. Biol., 2016

Assembly scaffolding with PE-contaminated mate-pair libraries.

Kristoffer Sahlin, Rayan Chikhi, Lars Arvestad

Bioinform., 2016

2015

Algorithms and statistical models for scaffolding contig assemblies and detecting structural variants using read pair data.

Kristoffer Sahlin

PhD thesis, 2015

2014

BESST - Efficient scaffolding of large fragmented assemblies.

Kristoffer Sahlin, Francesco Vezzi, Björn Nystedt, Joakim Lundeberg, Lars Arvestad

BMC Bioinform., 2014

2012

Improved gap size estimation for scaffolding algorithms.

Kristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, Lars Arvestad

Bioinform., 2012