Lars Arvestad

According to our database, Lars Arvestad authored at least 21 papers between 1997 and 2018.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2018

alv: a console-based viewer for molecular sequence alignments.

Lars Arvestad

J. Open Source Softw., 2018

RecPhyloXML: a format for reconciled gene trees.

Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin

Bioinform., 2018

2017

Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias.

Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad

J. Comput. Biol., 2017

VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces.

Raja Ali, Mikael Bark, Jorge Miró, Sayyed Muhammad, Joel Sjöstrand, Syed M. Zubair, Raja M. Abbas, Lars Arvestad

BMC Bioinform., 2017

2016

Probabilistic inference of lateral gene transfer events.

Mehmood Alam Khan, Owais Mahmudi, Ikram Ullah, Lars Arvestad, Jens Lagergren

BMC Bioinform., 2016

Assembly scaffolding with PE-contaminated mate-pair libraries.

Kristoffer Sahlin, Rayan Chikhi, Lars Arvestad

Bioinform., 2016

2015

Hierarchical Assembly of Pools.

Riccardo Vicedomini, Francesco Vezzi, Simone Scalabrin, Lars Arvestad, Alberto Policriti

Proceedings of the Bioinformatics and Biomedical Engineering, 2015

2014

BESST - Efficient scaffolding of large fragmented assemblies.

Kristoffer Sahlin, Francesco Vezzi, Björn Nystedt, Joakim Lundeberg, Lars Arvestad

BMC Bioinform., 2014

2013

GAM-NGS: genomic assemblies merger for next generation sequencing.

Riccardo Vicedomini, Francesco Vezzi, Simone Scalabrin, Lars Arvestad, Alberto Policriti

BMC Bioinform., 2013

GenPhyloData: realistic simulation of gene family evolution.

Joel Sjöstrand, Lars Arvestad, Jens Lagergren, Bengt Sennblad

BMC Bioinform., 2013

fastphylo: Fast tools for phylogenetics.

Mehmood Alam Khan, Isaac Elias, Erik Sjölund, Kristina Nylander, Roman Valls Guimera, Richard Schobesberger, Peter Schmitzberger, Jens Lagergren, Lars Arvestad

BMC Bioinform., 2013

Quantitative synteny scoring improves homology inference and partitioning of gene families.

Raja Ali, Sayyed Muhammad, Mehmood Alam Khan, Lars Arvestad

BMC Bioinform., 2013

2012

DLRS: gene tree evolution in light of a species tree.

Joel Sjöstrand, Bengt Sennblad, Lars Arvestad, Jens Lagergren

Bioinform., 2012

Improved gap size estimation for scaffolding algorithms.

Kristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, Lars Arvestad

Bioinform., 2012

2010

Classification of DNA sequences using Bloom filters.

Henrik Stranneheim, Max Käller, Tobias Allander, Björn Andersson, Lars Arvestad, Joakim Lundeberg

Bioinform., 2010

2009

The gene evolution model and computing its associated probabilities.

Lars Arvestad, Jens Lagergren, Bengt Sennblad

J. ACM, 2009

2007

primetv: a viewer for reconciled trees.

Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren, Lars Arvestad

BMC Bioinform., 2007

2006

Genome-Wide Survey for Biologically Functional Pseudogenes.

Örjan Svensson, Lars Arvestad, Jens Lagergren

PLoS Comput. Biol., 2006

2004

Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution.

Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad

Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

2003

Bayesian gene/species tree reconciliation and orthology analysis using MCMC.

Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

1997

Aligning Coding DNA in the Presence of Frame-Shift Errors.

Lars Arvestad

Proceedings of the Combinatorial Pattern Matching, 8th Annual Symposium, 1997