Bruce Tidor

According to our database, Bruce Tidor authored at least 19 papers between 1992 and 2013.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2013

Combined Model of Intrinsic and Extrinsic Variability for Computational Network Design with Application to Synthetic Biology.

Tina Toni, Bruce Tidor

PLoS Comput. Biol., 2013

2011

An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability.

XiaoNa Wei, Bu-Cong Han, Jing-Xian Zhang, X. H. Liu, C. Y. Tan, Y. Y. Jiang, Boon Chuan Low, Bruce Tidor, Yu Zong Chen

BMC Syst. Biol., 2011

Biochemical oscillator sensitivity analysis in the presence of conservation constraints.

Jared E. Toettcher, Anya Castillo, Bruce Tidor, Jacob White

Proceedings of the 48th Design Automation Conference, 2011

2010

Model Transformation of Metabolic Networks using a Petri Net Based Framework.

Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira

Proceedings of the Workshops of the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010) and of the 10th International Conference on Application of Concurrency to System Design (ACSD 2010), 2010

2009

Sensitivity Analysis for Oscillating Dynamical Systems.

A. Katharina Wilkins, Bruce Tidor, Jacob K. White, Paul I. Barton

SIAM J. Sci. Comput., 2009

Rotamer optimization for protein design through MAP estimation and problem-size reduction.

Eun-Jong Hong, Shaun M. Lippow, Bruce Tidor, Tomás Lozano-Pérez

J. Comput. Chem., 2009

CHARMM: The biomolecular simulation program.

Bernard R. Brooks, Charles L. Brooks III, Alexander D. MacKerell Jr., Lennart Nilsson, Robert J. Petrella, Benoît Roux, Y. Won, G. Archontis, Christian Bartels, Stefan Boresch, Amedeo Caflisch, Leo S. D. Caves, Qiang Cui, Aaron R. Dinner, Michael Feig, S. Fischer, Jiali Gao, Milan Hodoscek, Wonpil Im, Krzysztof Kuczera, Themis Lazaridis, J. Ma, Victor Ovchinnikov, Emanuele Paci, Richard W. Pastor, C. B. Post, J. Z. Pu, Michael Schaefer, Bruce Tidor, Richard M. Venable, H. Lee Woodcock III, X. Wu, W. Yang, Darrin M. York, Martin Karplus

J. Comput. Chem., 2009

Accurate solution of multi-region continuum biomolecule electrostatic problems using the linearized Poisson-Boltzmann equation with curved boundary elements.

Michael D. Altman, Jaydeep P. Bardhan, Jacob K. White, Bruce Tidor

J. Comput. Chem., 2009

MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets.

Bracken M. King, Bruce Tidor

Bioinform., 2009

A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems.

Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira

Proceedings of the Distributed Computing, 2009

2008

Stimulus Design for Model Selection and Validation in Cell Signaling.

Joshua F. Apgar, Jared E. Toettcher, Drew Endy, Forest M. White, Bruce Tidor

PLoS Comput. Biol., 2008

A meshless, spectrally accurate, integral equation solver for molecular surface electrostatics.

Shih-Hsien Kuo, Bruce Tidor, Jacob White

ACM J. Emerg. Technol. Comput. Syst., 2008

Optimal Drug Cocktail Design: Methods for Targeting Molecular Ensembles and Insights from Theoretical Model Systems.

Mala L. Radhakrishnan, Bruce Tidor

J. Chem. Inf. Model., 2008

2007

The Per2 Negative Feedback Loop Sets the Period in the Mammalian Circadian Clock Mechanism.

A. Katharina Wilkins, Paul I. Barton, Bruce Tidor

PLoS Comput. Biol., 2007

Efficient optimization of electrostatic interactions between biomolecules.

Jaydeep P. Bardhan, Michael D. Altman, Jacob K. White, Bruce Tidor

Proceedings of the 46th IEEE Conference on Decision and Control, 2007

2006

FFTSVD: A Fast Multiscale Boundary-Element Method Solver Suitable for Bio-MEMS and Biomolecule Simulation.

Michael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2006

2002

Fast methods for simulation of biomolecule electrostatics.

Shihhsien S. Kuo, Michael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White

Proceedings of the 2002 IEEE/ACM International Conference on Computer-aided Design, 2002

1993

An Analysis of Selection Procedures with Particular Attention Paid to Proportional and Boltzmann Selection.

Michael de la Maza, Bruce Tidor

Proceedings of the 5th International Conference on Genetic Algorithms, 1993

1992

Increased Flexibility in Genetic Algorithms: the Use of variable Boltzmann Selective pressure to control Propagation.

Michael de la Maza, Bruce Tidor

Proceedings of the Computer Science and Operations Research, 1992