Jonathan L. Haines

According to our database, Jonathan L. Haines authored at least 15 papers between 2006 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging.

Nadav Rakocz, Jeffrey N. Chiang, Muneeswar G. Nittala, Giulia Corradetti, Liran Tiosano, Swetha Velaga, Michael Thompson, Brian L. Hill, Sriram Sankararaman, Jonathan L. Haines, Margaret A. Pericak-Vance, Dwight Stambolian, Srinivas R. Sadda, Eran Halperin

npj Digit. Medicine, 2021

2020

Hadoop and PySpark for Reproducibility and Scalability of Genomic Sequencing Studies.

Nicholas R. Wheeler, Penelope Benchek, Brian W. Kunkle, Kara L. Hamilton-Nelson, MikeWarfe, Jeremy R. Fondran, Jonathan L. Haines, William S. Bush

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2018

Functional annotation of genomic variants in studies of late-onset Alzheimer's disease.

Mariusz Butkiewicz, Elizabeth E. Blue, Yuk Yee Leung, Xueqiu Jian, Edoardo Marcora, Alan E. Renton, Amanda Kuzma, Li-San Wang, Daniel C. Koboldt, Jonathan L. Haines, William S. Bush

Bioinform., 2018

2017

Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants.

Mariusz Butkiewicz, Jonathan L. Haines, William S. Bush

Bioinform., 2017

2016

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability.

Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen, Melissa A. Basford, Omri Gottesman, Peggy L. Peissig, Jennifer A. Pacheco, Gerard Tromp, Jyotishman Pathak, David S. Carrell, Stephen B. Ellis, Todd Lingren, William K. Thompson, Guergana Savova, Jonathan L. Haines, Dan M. Roden, Paul A. Harris, Joshua C. Denny

J. Am. Medical Informatics Assoc., 2016

Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model.

Jingchao Ni, Mehmet Koyutürk, Hanghang Tong, Jonathan L. Haines, Rong Xu, Xiang Zhang

BMC Bioinform., 2016

Pathway analysis by randomization incorporating structure - PARIS: an update.

Mariusz Butkiewicz, Jessica Cooke Bailey, Alex T. Frase, Scott M. Dudek, Brian L. Yaspan, Marylyn D. Ritchie, Sarah A. Pendergrass, Jonathan L. Haines

Bioinform., 2016

Drug-drug Interaction Profiles of Medication Regimens Extracted from a De-identified Electronic Medical Records System.

Mariusz Butkiewicz, Nicole A. Restrepo, Jonathan L. Haines, Dana C. Crawford

Proceedings of the Summit on Clinical Research Informatics, 2016

2015

Estimating cumulative pathway effects on risk for age-related macular degeneration using mixed linear models.

Jacob B. Hall, Jessica Cooke Bailey, Joshua Hoffman, Margaret A. Pericak-Vance, William K. Scott, Jaclyn Kovach, Stephen G. Schwartz, Anita Agarwal, Milam Brantley, Jonathan L. Haines, William S. Bush

BMC Bioinform., 2015

Mitochondrial Variation and the Risk of Age-Related Macular Degeneration Across Diverse Populations.

Nicole A. Restrepo, Sabrina L. Mitchell, Robert J. Goodloe, Deborah G. Murdock, Jonathan L. Haines, Dana C. Crawford

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014

Size matters: How population size influences genotype-phenotype association studies in anonymized data.

Raymond Heatherly, Joshua C. Denny, Jonathan L. Haines, Dan M. Roden, Bradley A. Malin

J. Biomed. Informatics, 2014

Genotype Correlation Analysis Reveals Pathway-Based Functional Disequilibrium and Potential Epistasis in the Human Interactome.

William S. Bush, Jonathan L. Haines

Proceedings of the Applications of Evolutionary Computation - 17th European Conference, 2014

2012

PheKB.org: An Online Collaboration Tool for Phenotype Algorithm Research.

Joshua Pruitt, Peter Speltz, Jacqueline Kirby, Melissa A. Basford, Jonathan L. Haines, Joshua C. Denny

Proceedings of the AMIA 2012, 2012

2006

Dissecting trait heterogeneity: a comparison of three clustering methods applied to genotypic data.

Tricia A. Thornton-Wells, Jason H. Moore, Jonathan L. Haines

BMC Bioinform., 2006

A comparative analysis of the information content in long and short SAGE libraries.

Yi-Ju Li, Puting Xu, Xuejun Qin, Donald E. Schmechel, Christine M. Hulette, Jonathan L. Haines, Margaret A. Pericak-Vance, John R. Gilbert

BMC Bioinform., 2006