Lloyd Allison

According to our database, Lloyd Allison authored at least 77 papers between 1978 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

The divergence time of protein structures modelled by Markov matrices and its relation to the divergence of sequences.

Sandun Rajapaksa, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arun Siddharth Konagurthu

CoRR, 2023

Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles.

Piyumi R. Amarasinghe, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arthur M. Lesk, Arun Siddharth Konagurthu

Bioinform., 2023

2022

Subclasses of Class Function used to Implement Transformations of Statistical Models.

Lloyd Allison

CoRR, 2022

2021

The difficulty of being moral.

Yang Li, Lloyd Allison, Kevin B. Korb

Theor. Comput. Sci., 2021

Causal KL: Evaluating Causal Discovery.

Rodney T. O'Donnell, Kevin B. Korb, Lloyd Allison

CoRR, 2021

Markov Blanket Discovery using Minimum Message Length.

Yang Li, Kevin B. Korb, Lloyd Allison

CoRR, 2021

On Universal Codes for Integers: Wallace Tree, Elias Omega and Beyond.

Lloyd Allison, Arun Siddharth Konagurthu, Daniel F. Schmidt

Proceedings of the 31st Data Compression Conference, 2021

On identifying statistical redundancy at the level of amino acid subsequences.

Sandun Rajapaksa, Dinithi Sumanaweera, Maria Garcia de la Banda, Peter J. Stuckey, David Abramson, Lloyd Allison, Arthur M. Lesk, Arun Siddharth Konagurthu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Bridging the Gaps in Statistical Models of Protein Alignment.

Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu

CoRR, 2020

On the complexity of graphs (networks) by information content, and conditional (mutual) information given other graphs.

Lloyd Allison

CoRR, 2020

2019

On Universal Codes for Integers: Wallace Tree, Elias Omega and Variations.

Lloyd Allison, Arun Siddharth Konagurthu, Daniel F. Schmidt

CoRR, 2019

Proving the NP-completeness of optimal moral graph triangulation.

Yang Li, Lloyd Allison, Kevin B. Korb

CoRR, 2019

The Complexity of Morality: Checking Markov Blanket Consistency with DAGs via Morality.

Yang Li, Kevin B. Korb, Lloyd Allison

CoRR, 2019

Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors.

Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu

Bioinform., 2019

2018

The Bits Between Proteins.

Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu

Proceedings of the 2018 Data Compression Conference, 2018

Coding Ockham's Razor

Lloyd Allison

Springer, ISBN: 978-3-319-76432-0, 2018

2017

Statistical inference of protein structural alignments using information and compression.

James H. Collier, Lloyd Allison, Arthur M. Lesk, Peter J. Stuckey, Maria Garcia de la Banda, Arun Siddharth Konagurthu

Bioinform., 2017

Statistical Compression of Protein Folding Patterns for Inference of Recurrent Substructural Themes.

Ramanan Subramanian, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, David Abramson, Arthur M. Lesk, Arun Siddharth Konagurthu

Proceedings of the 2017 Data Compression Conference, 2017

2015

Minimum message length estimation of mixtures of multivariate Gaussian and von Mises-Fisher distributions.

Parthan Kasarapu, Lloyd Allison

Mach. Learn., 2015

On Sufficient Statistics of Least-Squares Superposition of Vector Sets.

Arun Siddharth Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk

J. Comput. Biol., 2015

2014

A new statistical framework to assess structural alignment quality using information compression.

James H. Collier, Lloyd Allison, Arthur M. Lesk, Maria Garcia de la Banda, Arun Siddharth Konagurthu

Bioinform., 2014

A Statistically Efficient and Scalable Method for Log-Linear Analysis of High-Dimensional Data.

François Petitjean, Lloyd Allison, Geoffrey I. Webb

Proceedings of the 2014 IEEE International Conference on Data Mining, 2014

2013

Statistical Inference of Protein "LEGO Bricks".

Arun Siddharth Konagurthu, Lloyd Allison, David Abramson, Peter J. Stuckey, Arthur M. Lesk

Proceedings of the 2013 IEEE 13th International Conference on Data Mining, 2013

2012

Minimum message length inference of secondary structure from protein coordinate data.

Arun Siddharth Konagurthu, Arthur M. Lesk, Lloyd Allison

Bioinform., 2012

2011

Piecewise linear approximation of protein structures using the principle of minimum message length.

Arun Siddharth Konagurthu, Lloyd Allison, Peter J. Stuckey, Arthur M. Lesk

Bioinform., 2011

MMLD Inference of Multilayer Perceptrons.

Enes Makalic, Lloyd Allison

Proceedings of the Algorithmic Probability and Friends. Bayesian Prediction and Artificial Intelligence, 2011

2010

A genome alignment algorithm based on compression.

Minh Duc Cao, Trevor I. Dix, Lloyd Allison

BMC Bioinform., 2010

Design of an Efficient Out-of-Core Read Alignment Algorithm.

Arun Siddharth Konagurthu, Lloyd Allison, Thomas C. Conway, Bryan Beresford-Smith, Justin Zobel

Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

2009

Computing Substitution Matrices for Genomic Comparative Analysis.

Minh Duc Cao, Trevor I. Dix, Lloyd Allison

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2009

A Distance Measure for Genome Phylogenetic Analysis.

Minh Duc Cao, Lloyd Allison, Trevor I. Dix

Proceedings of the AI 2009: Advances in Artificial Intelligence, 2009

Modelling Hepatitis B Virus Antiviral Therapy and Drug Resistant Mutant Strains.

Julie Bernal, Trevor I. Dix, Lloyd Allison, Angeline Bartholomeusz, Lilly Yuen

Proceedings of the Artificial Life: Borrowing from Biology, 4th Australian Conference, 2009

2007

Comparative analysis of long DNA sequences by per element information content using different contexts.

Trevor I. Dix, David R. Powell, Lloyd Allison, Julie Bernal, Samira Jaeger, Linda Stern

BMC Bioinform., 2007

A Simple Statistical Algorithm for Biological Sequence Compression.

Minh Duc Cao, Trevor I. Dix, Lloyd Allison, Chris Mears

Proceedings of the 2007 Data Compression Conference (DCC 2007), 2007

2006

Learning Hybrid Bayesian Networks by MML.

Rodney T. O'Donnell, Lloyd Allison, Kevin B. Korb

Proceedings of the AI 2006: Advances in Artificial Intelligence, 2006

A programming paradigm for machine learning, with a case study of Bayesian networks.

Lloyd Allison

Proceedings of the Computer Science 2006, 2006

2005

Models for machine learning and data mining in functional programming.

Lloyd Allison

J. Funct. Program., 2005

2004

Modelling-Alignment for Non-random Sequences.

David R. Powell, Lloyd Allison, Trevor I. Dix

Proceedings of the AI 2004: Advances in Artificial Intelligence, 2004

2003

Longest Biased Interval and Longest Non-negative Sum Interval.

Lloyd Allison

Bioinform., 2003

Probability Model Type Sufficiency.

Leigh J. Fitzgibbon, Lloyd Allison, Joshua W. Comley

Proceedings of the Intelligent Data Engineering and Automated Learning, 2003

Flexible Decision Trees in a General Data-Mining Environment.

Joshua W. Comley, Lloyd Allison, Leigh J. Fitzgibbon

Proceedings of the Intelligent Data Engineering and Automated Learning, 2003

Types and Classes of Machine Learning and Data Mining.

Lloyd Allison

Proceedings of the Computer Science 2003, 2003

2002

Change-Point Estimation Using New Minimum Message Length Approximations.

Leigh J. Fitzgibbon, David L. Dowe, Lloyd Allison

Proceedings of the PRICAI 2002: Trends in Artificial Intelligence, 2002

Univariate Polynomial Inference by Monte Carlo Message Length Approximation.

Leigh J. Fitzgibbon, David L. Dowe, Lloyd Allison

Proceedings of the Machine Learning, 2002

2000

Sequence Complexity for Biological Sequence Analysis.

Lloyd Allison, Linda Stern, Timothy Edgoose, Trevor I. Dix

Comput. Chem., 2000

Intelligent Systems in Molecular Biology (ISMB98), 27 June - 1 July, 1998, Montreal.

Lloyd Allison

Comput. Chem., 2000

Generator and Search Objects in Java.

Lloyd Allison

J. Res. Pract. Inf. Technol., 2000

Minimum Message Length Grouping of Ordered Data.

Leigh J. Fitzgibbon, Lloyd Allison, David L. Dowe

Proceedings of the Algorithmic Learning Theory, 11th International Conference, 2000

1999

MML Markov classification of sequential data.

Timothy Edgoose, Lloyd Allison

Stat. Comput., 1999

A Versatile Divide and Conquer Technique for Optimal String Alignment.

David R. Powell, Lloyd Allison, Trevor I. Dix

Inf. Process. Lett., 1999

Compression and Approximate Matching.

Lloyd Allison, David R. Powell, Trevor I. Dix

Comput. J., 1999

1998

What is a Tall Poppy Among Web Pages?

Glen Pringle, Lloyd Allison, David L. Dowe

Comput. Networks, 1998

The Hunter and the Hunted - Modelling the Relationship Between Web Pages and Search Engines.

David L. Dowe, Lloyd Allison, Glen Pringle

Proceedings of the Research and Development in Knowledge Discovery and Data Mining, 1998

Compression of Strings with Approximate Repeats.

Lloyd Allison, Timothy Edgoose, Trevor I. Dix

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

Minimum Message Length Hidden Markov Modelling.

Timothy Edgoose, Lloyd Allison

Proceedings of the Data Compression Conference, 1998

Alignment of Low Information Sequences.

David R. Powell, Lloyd Allison, Trevor I. Dix, David L. Dowe

Proceedings of Computing: The Fourth Australasian Theory Symposium (CATS'98), 1998

1994

Using Hirschberg's Algorithm to Generate Random Alignments of Strings.

Lloyd Allison

Inf. Process. Lett., 1994

Motifs in Biology: Analysis of Ambiguous Data: Introduction.

Toni Kazic, David J. States, Lloyd Allison

Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

1993

A Correction to the Denotational Semantics for the Prolog of Nicholson and Foo.

Alan Finlay, Lloyd Allison

ACM Trans. Program. Lang. Syst., 1993

Reconstruction of strings past.

Chut N. Yee, Lloyd Allison

Comput. Appl. Biosci., 1993

Applications of Recursively Defined Data Structures.

Lloyd Allison

Aust. Comput. J., 1993

1992

Lazy Dynamic-Programming Can Be Eager.

Lloyd Allison

Inf. Process. Lett., 1992

1991

Shortest Path and Closure Algorithms for Banded Matrices.

Lloyd Allison, Trevor I. Dix, Chut N. Yee

Inf. Process. Lett., 1991

1990

Continuations Implement Generators and Streams.

Lloyd Allison

Comput. J., 1990

Restriction site mapping for three or more enzymes.

S. T. Ho, Lloyd Allison, Chut N. Yee

Comput. Appl. Biosci., 1990

1989

Circular Programs and Self-referential Structures.

Lloyd Allison

Softw. Pract. Exp., 1989

Direct Semantics and Exceptions Define Jumps and Coroutines.

Lloyd Allison

Inf. Process. Lett., 1989

Denotational Semantics of a Command Interpreter and Their Implementation in Standard ML.

C. McDonald, Lloyd Allison

Comput. J., 1989

1988

Some Applications of Continuations.

Lloyd Allison

Comput. J., 1988

Restriction site mapping is in separation theory.

Lloyd Allison, Chut N. Yee

Comput. Appl. Biosci., 1988

1986

A Bit-String Longest-Common-Subsequence Algorithm.

Lloyd Allison, Trevor I. Dix

Inf. Process. Lett., 1986

1985

Programming Denotational Semantics II.

Lloyd Allison

Comput. J., 1985

1983

Syntax Directed Program Editing.

Lloyd Allison

Softw. Pract. Exp., 1983

Stable Marriages by Coroutines.

Lloyd Allison

Inf. Process. Lett., 1983

Programming Denotational Semantics.

Lloyd Allison

Comput. J., 1983

1981

Generating Coset Representatives for Permutation Groups.

Lloyd Allison

J. Algorithms, 1981

1978

On nondeterministic control structures.

Lloyd Allison

ACM SIGPLAN Notices, 1978

Phrase Structures, Non-Determinism and Backtracking.

Lloyd Allison

Inf. Process. Lett., 1978