Manolis Maragkakis

According to our database, Manolis Maragkakis authored at least 14 papers between 2009 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

SamQL: a structured query language and filtering tool for the SAM/BAM file format.

Christopher T. Lee, Manolis Maragkakis

BMC Bioinform., 2021

2017

bíogo: a simple high-performance bioinformatics toolkit for the Go language.

R. Daniel Kortschak, Josh Bleecher Snyder, Manolis Maragkakis, David L. Adelson

J. Open Source Softw., 2017

2013

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs.

Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Martin Reczko, Manolis Maragkakis, Theodore M. Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2013

2012

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.

Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2012

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.

Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2012

Functional microRNA targets in protein coding sequences.

Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou

Bioinform., 2012

TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction.

Thanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos K. Sellis

Proceedings of the Scientific and Statistical Database Management, 2012

2011

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association.

Manolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2011

2010

FreePub: Collecting and Organizing Scientific Material Using Mindmaps.

Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010

Predicting miRNA targets utilizing an Extended Profile HMM.

Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch

Proceedings of the German Conference on Bioinformatics 2010, 2010

2009

DIANA-microT web server: elucidating microRNA functions through target prediction.

Manolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2009

Accurate microRNA target prediction correlates with protein repression levels.

Manolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou

BMC Bioinform., 2009

DIANA-mirPath: Integrating human and mouse microRNAs in pathways.

Giorgos L. Papadopoulos, Panagiotis Alexiou, Manolis Maragkakis, Martin Reczko, Artemis G. Hatzigeorgiou

Bioinform., 2009

Lost in translation: an assessment and perspective for computational microRNA target identification.

Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou

Bioinform., 2009