Manuel Rueda

According to our database, Manuel Rueda authored at least 16 papers between 2007 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

ClarID: a human-readable and compact identifier specification for biomedical metadata integration.

Manuel Rueda, Ivo Glynne Gut

J. Biomed. Semant., December, 2026

2025

HERO-Genomics: An Ontology for Integration and Access of Multicenter Genomic Data.

Mirco Cazzaro, Ivo Glynne Gut, Laura Menotti, Manuel Rueda, Gianmaria Silvello

Proceedings of the 16th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2025), 2025

2024

Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyond.

Ivo C. Leist, María Rivas-Torrubia, Marta E. Alarcón-Riquelme, Guillermo Barturen, Ivo Glynne Gut, Manuel Rueda

BMC Bioinform., December, 2024

Convert-Pheno: A software toolkit for the interconversion of standard data models for phenotypic data.

Manuel Rueda, Ivo C. Leist, Ivo Glynne Gut

J. Biomed. Informatics, January, 2024

2022

The European Genome-phenome Archive in 2021.

Mallory Ann Freeberg, Lauren A. Fromont, Teresa D'altri, Anna Foix Romero, Jorge Izquierdo Ciges, Aina Jene, Giselle Kerry, Mauricio Moldes, Roberto Ariosa, Silvia Bahena, Daniel Barrowdale, Marcos Casado Barbero, Dietmar Fernández-Orth, Carles Garcia-Linares, Emilio Garcia-Rios, Frédéric Haziza, Bela Juhasz, Oscar Martinez Llobet, Gemma Milla, Anand Mohan, Manuel Rueda, Aravind Sankar, Dona Shaju, Ashutosh Shimpi, Babita Singh, Coline Thomas, Sabela de la Torre, Umuthan Uyan, Claudia Vasallo, Paul Flicek, Roderic Guigó, Arcadi Navarro, Helen E. Parkinson, Thomas M. Keane, Jordi Rambla

Nucleic Acids Res., 2022

Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data.

Manuel Rueda, Roberto Ariosa, Mauricio Moldes, Jordi Rambla

Bioinform., 2022

A quality control portal for sequencing data deposited at the European genome-phenome archive.

Dietmar Fernández-Orth, Manuel Rueda, Babita Singh, Mauricio Moldes, Aina Jene, Marta Ferri, Claudia Vasallo, Lauren A. Fromont, Arcadi Navarro, Jordi Rambla

Briefings Bioinform., 2022

2017

From Homology Models to a Set of Predictive Binding Pockets-a 5-HT_1A Receptor Case Study.

Dawid Warszycki, Manuel Rueda, Stefan Mordalski, Kurt Kristiansen, Grzegorz Satala, Krzysztof Rataj, Zdzislaw Chilmonczyk, Ingebrigt Sylte, Ruben Abagyan, Andrzej J. Bojarski

J. Chem. Inf. Model., 2017

SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort.

Manuel Rueda, Ali Torkamani

BMC Bioinform., 2017

2013

Exploring Early Stages of the Chemical Unfolding of Proteins at the Proteome Scale.

Michela Candotti, Alberto Pérez, Carles Ferrer-Costa, Manuel Rueda, Tim Meyer, Josep Lluís Gelpí, Modesto Orozco

PLoS Comput. Biol., 2013

2012

ALiBERO: Evolving a Team of Complementary Pocket Conformations Rather than a Single Leader.

Manuel Rueda, Maxim Totrov, Ruben Abagyan

J. Chem. Inf. Model., 2012

2010

Recipes for the Selection of Experimental Protein Conformations for Virtual Screening.

Manuel Rueda, Giovanni Bottegoni, Ruben Abagyan

J. Chem. Inf. Model., 2010

SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts.

Manuel Rueda, Vsevolod Katritch, Eugene Raush, Ruben Abagyan

Bioinform., 2010

2009

Consistent Improvement of Cross-Docking Results Using Binding Site Ensembles Generated with Elastic Network Normal Modes.

Manuel Rueda, Giovanni Bottegoni, Ruben Abagyan

J. Chem. Inf. Model., 2009

FlexServ: an integrated tool for the analysis of protein flexibility.

Jordi Camps, Oliver Carrillo, Agustí Emperador, Laura Orellana, Adam Hospital, Manuel Rueda, Damjan Cicin-Sain, Marco D'Abramo, Josep Lluís Gelpí, Modesto Orozco

Bioinform., 2009

2007

A consensus view of protein dynamics.

Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, Alberto Pérez, Jordi Camps, Adam Hospital, Josep Lluís Gelpí, Modesto Orozco

Proc. Natl. Acad. Sci. USA, 2007