Thomas M. Keane

According to our database, Thomas M. Keane authored at least 25 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022.

Matthew Thakur, Alex Bateman, Cath Brooksbank, Mallory Ann Freeberg, Melissa Harrison, Matthew Hartley, Thomas M. Keane, Gerard J. Kleywegt, Andrew Leach, Maria Levchenko, Sarah L. Morgan, Ellen M. McDonagh, Sandra E. Orchard, Irene Papatheodorou, Sameer Velankar, Juan Antonio Vizcaíno, Rick Witham, Barbara Zdrazil, Johanna R. McEntyre

Nucleic Acids Res., January, 2023

2022

The European Genome-phenome Archive in 2021.

Mallory Ann Freeberg, Lauren A. Fromont, Teresa D'altri, Anna Foix Romero, Jorge Izquierdo Ciges, Aina Jene, Giselle Kerry, Mauricio Moldes, Roberto Ariosa, Silvia Bahena, Daniel Barrowdale, Marcos Casado Barbero, Dietmar Fernández-Orth, Carles Garcia-Linares, Emilio Garcia-Rios, Frédéric Haziza, Bela Juhasz, Oscar Martinez Llobet, Gemma Milla, Anand Mohan, Manuel Rueda, Aravind Sankar, Dona Shaju, Ashutosh Shimpi, Babita Singh, Coline Thomas, Sabela de la Torre, Umuthan Uyan, Claudia Vasallo, Paul Flicek, Roderic Guigó, Arcadi Navarro, Helen E. Parkinson, Thomas M. Keane, Jordi Rambla

Nucleic Acids Res., 2022

The European Variation Archive: a FAIR resource of genomic variation for all species.

Timothee Cezard, Fiona Cunningham, Sarah E. Hunt, Baron Koylass, Nitin Kumar, Gary Saunders, April Shen, Andres f Silva, Kirill Tsukanov, Sundararaman Venkataraman, Paul Flicek, Helen E. Parkinson, Thomas M. Keane

Nucleic Acids Res., 2022

2021

Refget: standardized access to reference sequences.

Andrew D. Yates, Jeremy Adams, Somesh Chaturvedi, Robert Davies, Matthew R. Laird, Rasko Leinonen, Rishi Nag, Nathan C. Sheffield, Oliver Hofmann, Thomas M. Keane

Bioinform., 2021

Crypt4GH: a file format standard enabling native access to encrypted data.

Alexander Senf, Robert Davies, Frédéric Haziza, John Marshall, Juan Ramón Troncoso-Pastoriza, Oliver Hofmann, Thomas M. Keane

Bioinform., 2021

2020

The European Nucleotide Archive in 2019.

Clara Amid, Blaise T. F. Alako, Vishnukumar Balavenkataraman Kadhirvelu, Tony Burdett, Josephine Burgin, Jun Fan, Peter W. Harrison, Sam Holt, Abdulrahman Hussein, Eugene Ivanov, Suran Jayathilaka, Simon Kay, Thomas M. Keane, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Annalisa Milano, Amir Pakseresht, Nadim Rahman, Jeena Rajan, Kethi Reddy, Edward Richards, Dmitriy Smirnov, Alexey Sokolov, Senthilnathan Vijayaraja, Guy Cochrane

Nucleic Acids Res., 2020

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.

Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Alex Bateman, Alan J. Bridge, Guy Cochrane, Robert D. Finn, Frank Oliver Glöckner, Marc Hanauer, Thomas M. Keane, Andrew Leach, Luana Licata, Per Oksvold, Sandra E. Orchard, Christine A. Orengo, Helen E. Parkinson, Bengt Persson, Pablo Porras, Jordi Rambla, Ana Rath, Charlotte Rodwell, Ugis Sarkans, Dietmar Schomburg, Ian Sillitoe, J. Dylan Spalding, Mathias Uhlén, Sameer Velankar, Juan Antonio Vizcaíno, Kalle von Feilitzen, Christian von Mering, Andrew D. Yates, Niklas Blomberg, Christine Durinx, Johanna R. McEntyre

Bioinform., 2020

2019

The European Nucleotide Archive in 2018.

Peter W. Harrison, Blaise T. F. Alako, Clara Amid, Ana Cerdeño-Tárraga, Iain Cleland, Sam Holt, Abdulrahman Hussein, Suran Jayathilaka, Simon Kay, Thomas M. Keane, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Annalisa Milano, Nima Pakseresht, Jeena Rajan, Kethi Reddy, Edward Richards, Marc Rossello, Nicole Silvester, Dmitriy Smirnov, Ana Luisa Toribio, Senthilnathan Vijayaraja, Guy Cochrane

Nucleic Acids Res., 2019

htsget: a protocol for securely streaming genomic data.

Jerome Kelleher, Mike Lin, Carl H. Albach, Ewan Birney, Robert Davies, Marina Gourtovaia, David Glazer, Cristina Y. González, David K. Jackson, Aaron Kemp, John Marshall, Andrew Nowak, Alexander Senf, Jaime M. Tovar-Corona, Alexander Vikhorev, Thomas M. Keane, GA4GH Streaming Task Team

Bioinform., 2019

2018

The European Nucleotide Archive in 2017.

Nicole Silvester, Blaise T. F. Alako, Clara Amid, Ana Cerdeño-Tárraga, Laura Clarke, Iain Cleland, Peter W. Harrison, Suran Jayathilaka, Simon Kay, Thomas M. Keane, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Manuela Menchi, Kethi Reddy, Nima Pakseresht, Jeena Rajan, Marc Rossello, Dmitriy Smirnov, Ana Luisa Toribio, Daniel Vaughan, Vadim Zalunin, Guy Cochrane

Nucleic Acids Res., 2018

2013

RetroSeq: transposable element discovery from next-generation sequencing data.

Thomas M. Keane, Kim Wong, David J. Adams

Bioinform., 2013

2010

Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system.

Andrew J. Page, Thomas M. Keane, Thomas J. Naughton

J. Parallel Distributed Comput., 2010

2009

ABACAS: algorithm-based automatic contiguation of assembled sequences.

Samuel A. Assefa, Thomas M. Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman

Bioinform., 2009

2008

Scheduling in a dynamic heterogeneous distributed system using estimation error.

Andrew J. Page, Thomas M. Keane, Thomas J. Naughton

J. Parallel Distributed Comput., 2008

2007

MultiPhyl: a high-throughput phylogenomics webserver using distributed computing.

Thomas M. Keane, Thomas J. Naughton, James O. McInerney

Nucleic Acids Res., 2007

2006

Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines.

Thomas M. Keane, Andrew J. Page, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney

Algorithmica, 2006

Distributed Monte Carlo simulation of light transportation in tissue.

Andrew J. Page, Shirley Coyle, Thomas M. Keane, Thomas J. Naughton, Charles Markham, Tomás E. Ward

Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

2005

DPRml: distributed phylogeny reconstruction by maximum likelihood.

Thomas M. Keane, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney, Grace P. McCormack

Bioinform., 2005

DSEARCH: sensitive database searching using distributed computing.

Thomas M. Keane, Thomas J. Naughton

Bioinform., 2005

Bioinformatics on a Heterogeneous Java Distributed System.

Andrew J. Page, Thomas M. Keane, Thomas J. Naughton

Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005

A High-Throughput Bioinformatics Distributed Computing Platform.

Thomas M. Keane, Andrew J. Page, James O. McInerney, Thomas J. Naughton

Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems (CBMS 2005), 2005

2004

Adaptive Scheduling across a Distributed Computation Platform.

Andrew J. Page, Thomas M. Keane, Thomas J. Naughton

Proceedings of the 3rd International Symposium on Parallel and Distributed Computing (ISPDC 2004), 2004

2003

Multi-tiered distributed computing platform.

Andrew J. Page, Thomas M. Keane, Richard Allen, Thomas J. Naughton, John Waldron

Proceedings of the 2nd International Symposium on Principles and Practice of Programming in Java, 2003

2002

Distributed computing for DNA analysis.

Thomas M. Keane, Richard Allen, Thomas J. Naughton, James O. McInerney, John Waldron

Proceedings of the naugural International Symposium on Principles and Practice of Programming in Java, 2002

Distributed Java Platform with Programmable MIMD Capabilities.

Thomas M. Keane, Richard Allen, Thomas J. Naughton, James O. McInerney, John Waldron

Proceedings of the Scientific Engineering for Distributed Java Applications, 2002