Marco Previtali

According to our database, Marco Previtali authored at least 22 papers between 2014 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches.

Paola Bonizzoni, Matteo Costantini, Clelia de Felice, Alessia Petescia, Yuri Pirola, Marco Previtali, Raffaella Rizzi, Jens Stoye, Rocco Zaccagnino, Rosalba Zizza

Inf. Sci., 2022

2021

MALVIRUS: an integrated application for viral variant analysis.

Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali

BMC Bioinform., November, 2021

Computing the multi-string BWT and LCP array in external memory.

Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi

Theor. Comput. Sci., 2021

Shark: fishing relevant reads in an RNA-Seq sample.

Luca Denti, Yuri Pirola, Marco Previtali, Tamara Ceccato, Gianluca Della Vedova, Raffaella Rizzi, Paola Bonizzoni

Bioinform., 2021

Triplet-based similarity score for fully multilabeled trees with poly-occurring labels.

Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali, Gianluca Della Vedova

Bioinform., 2021

2019

Network Properties.

Stefano Beretta, Luca Denti, Marco Previtali

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Graph Theory and Definitions.

Stefano Beretta, Luca Denti, Marco Previtali

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era.

Raffaella Rizzi, Stefano Beretta, Murray Patterson, Yuri Pirola, Marco Previtali, Gianluca Della Vedova, Paola Bonizzoni

Quant. Biol., 2019

Multithread Multistring Burrows-Wheeler Transform and Longest Common Prefix Array.

Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi

J. Comput. Biol., 2019

2018

Bidirectional Variable-Order de Bruijn Graphs.

Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali, Simon J. Puglisi

Int. J. Found. Comput. Sci., 2018

ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events.

Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali, Paola Bonizzoni

BMC Bioinform., 2018

Divide and Conquer Computation of the Multi-string BWT and LCP Array.

Paola Bonizzoni, Gianluca Della Vedova, Serena Nicosia, Yuri Pirola, Marco Previtali, Raffaella Rizzi

Proceedings of the Sailing Routes in the World of Computation, 2018

2017

Self-indexing for de novo assembly.

Marco Previtali

PhD thesis, 2017

FSG: Fast String Graph Construction for De Novo Assembly.

Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi

J. Comput. Biol., 2017

Computing the BWT and LCP array of a Set of Strings in External Memory.

Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi

CoRR, 2017

An External-Memory Algorithm for String Graph Construction.

Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi

Algorithmica, 2017

Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext.

Stefano Beretta, Paola Bonizzoni, Luca Denti, Marco Previtali, Raffaella Rizzi

Proceedings of the Algorithms for Computational Biology, 2017

2016

LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly.

Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi

J. Comput. Biol., 2016

A New Lightweight Algorithm to compute the BWT and the LCP array of a Set of Strings.

Paola Bonizzoni, Gianluca Della Vedova, Serena Nicosia, Marco Previtali, Raffaella Rizzi

CoRR, 2016

Fully Dynamic de Bruijn Graphs.

Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali

Proceedings of the String Processing and Information Retrieval, 2016

FSG: Fast String Graph Construction for De Novo Assembly of Reads Data.

Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi

Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2014

Constructing String Graphs in External Memory.

Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi

Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014