Marianne Rooman

According to our database, Marianne Rooman authored at least 27 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

pycofitness - Evaluating the fitness landscape of RNA and protein sequences.

Fabrizio Pucci, Mehari B. Zerihun, Marianne Rooman, Alexander Schug

Bioinform., February, 2024

2023

Estimating the Vertical Ionization Potential of Single-Stranded DNA Molecules.

Marianne Rooman, Fabrizio Pucci

J. Chem. Inf. Model., March, 2023

Critical review of conformational B-cell epitope prediction methods.

Gabriel Cia, Fabrizio Pucci, Marianne Rooman

Briefings Bioinform., January, 2023

2022

SpikePro: a webserver to predict the fitness of SARS-CoV-2 variants.

Gabriel Cia, Jean Marc Kwasigroch, Marianne Rooman, Fabrizio Pucci

Bioinform., 2022

2021

BRANEart: Identify Stability Strength and Weakness Regions in Membrane Proteins.

Sankar Basu, Simon S. Assaf, Fabian Teheux, Marianne Rooman, Fabrizio Pucci

Frontiers Bioinform., 2021

AI challenges for predicting the impact of mutations on protein stability.

Fabrizio Pucci, Martin Schwersensky, Marianne Rooman

CoRR, 2021

MutaFrame - an interpretative visualization framework for deleteriousness prediction of missense variants in the human exome.

François Ancien, Fabrizio Pucci, Wim F. Vranken, Marianne Rooman

Bioinform., 2021

2020

SOLart: a structure-based method to predict protein solubility and aggregation.

Qingzhen Hou, Jean Marc Kwasigroch, Marianne Rooman, Fabrizio Pucci

Bioinform., 2020

2018

Lexicon Visualization Library and JavaScript for Scientific Data Visualization.

Ibrahim Tanyalcin, Carla Al Assaf, Julien Ferté, François Ancien, Taushif Khan, Guillaume Smits, Marianne Rooman, Wim F. Vranken

Comput. Sci. Eng., 2018

Quantification of biases in predictions of protein stability changes upon mutations.

Fabrizio Pucci, Katrien V. Bernaerts, Jean Marc Kwasigroch, Marianne Rooman

Bioinform., 2018

2017

DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins.

Daniele Raimondi, Ibrahim Tanyalcin, Julien Ferté, Andrea M. Gazzo, Gabriele Orlando, Tom Lenaerts, Marianne Rooman, Wim F. Vranken

Nucleic Acids Res., 2017

SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence.

Georgios A. Dalkas, Marianne Rooman

BMC Bioinform., 2017

SCooP: an accurate and fast predictor of protein stability curves as a function of temperature.

Fabrizio Pucci, Jean Marc Kwasigroch, Marianne Rooman

Bioinform., 2017

2016

Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects.

Daniele Raimondi, Andrea M. Gazzo, Marianne Rooman, Tom Lenaerts, Wim F. Vranken

Bioinform., 2016

2014

Stability Curve Prediction of Homologous Proteins Using Temperature-Dependent Statistical Potentials.

Fabrizio Pucci, Marianne Rooman

PLoS Comput. Biol., 2014

2013

BeAtMuSiC: prediction of changes in protein-protein binding affinity on mutations.

Yves Dehouck, Jean Marc Kwasigroch, Marianne Rooman, Dimitri Gilis

Nucleic Acids Res., 2013

2012

Identification of protein stability patches that pinpoint key structural or functional sites.

Marie De Laet, Yves Dehouck, Dimitri Gilis, Marianne Rooman

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

PoPMuSiC 2.1 : a web server for the estimation of protein stability changes upon mutation and sequence optimality.

Yves Dehouck, Jean Marc Kwasigroch, Dimitri Gilis, Marianne Rooman

BMC Bioinform., 2011

Modeling Delays in State Transition of a Bistable Genetic Switch under the Influence of Extrinsic Noise.

Jaroslav Albert, Marianne Rooman

Proceedings of the BIOINFORMATICS 2011, 2011

2010

Gene expression model (in)validation by Fourier analysis.

Tomasz Konopka, Marianne Rooman

BMC Syst. Biol., 2010

Robustness Analysis of a Linear Dynamical Model of the <i>Drosophila</i> Gene Expression.

Alexandre Haye, Jaroslav Albert, Marianne Rooman

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2010

2009

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0.

Yves Dehouck, Aline Grosfils, Benjamin Folch, Dimitri Gilis, Philippe Bogaerts, Marianne Rooman

Bioinform., 2009

2008

Thermostability of Salt Bridges versus Hydrophobic Interactions in Proteins Probed by Statistical Potentials.

Benjamin Folch, Marianne Rooman, Yves Dehouck

J. Chem. Inf. Model., 2008

SODa: An Mn/Fe superoxide dismutase prediction and design server.

Jean Marc Kwasigroch, René Wintjens, Dimitri Gilis, Marianne Rooman

BMC Bioinform., 2008

2006

Development of Novel Statistical Potentials Describing Cation-pi Interactions in Proteins and Comparison with Semiempirical and Quantum Chemistry Approaches.

Dimitri Gilis, Christophe Biot, Eric Buisine, Yves Dehouck, Marianne Rooman

J. Chem. Inf. Model., 2006

Prelude&Fugue, predicting local protein structure, early folding regions and structural weaknesses.

Jean Marc Kwasigroch, Marianne Rooman

Bioinform., 2006

2002

PoPMuSiC, rationally designing point mutations in protein structures.

Jean Marc Kwasigroch, Dimitri Gilis, Yves Dehouck, Marianne Rooman

Bioinform., 2002