Olivier Poch

According to our database, Olivier Poch authored at least 46 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of two.

2023

Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events.

Arnaud Kress, Olivier Poch, Odile Lecompte, Julie Dawn Thompson

Frontiers Bioinform., May, 2023

2021

Spliceator: multi-species splice site prediction using convolutional neural networks.

Nicolas Scalzitti, Arnaud Kress, Romain Orhand, Thomas Weber, Luc Moulinier, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Dawn Thompson

BMC Bioinform., 2021

Potential role of the <i>X</i> circular code in the regulation of gene expression.

Julie Dawn Thompson, Raymond Ripp, Claudine Mayer, Olivier Poch, Christian J. Michel

Biosyst., 2021

2020

Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes.

Corentin Meyer, Nicolas Scalzitti, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Dawn Thompson

BMC Bioinform., 2020

2019

OrthoInspector 3.0: open portal for comparative genomics.

Yannis Nevers, Arnaud Kress, Audrey Defosset, Raymond Ripp, Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte

Nucleic Acids Res., 2019

Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes.

Gopal Dila, Christian J. Michel, Olivier Poch, Raymond Ripp, Julie Dawn Thompson

Biosyst., 2019

2018

PROBE: analysis and visualization of protein block-level evolution.

Arnaud Kress, Odile Lecompte, Olivier Poch, Julie Dawn Thompson

Bioinform., 2018

2016

LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system.

Renaud Vanhoutrève, Arnaud Kress, Baptiste Legrand, Hélène Gass, Olivier Poch, Julie Dawn Thompson

BMC Bioinform., 2016

2015

OrthoInspector 2.0: Software and database updates.

Benjamin Linard, Alexis Allot, Raphael Schneider, Can Morel, Raymond Ripp, Marc Bigler, Julie Dawn Thompson, Olivier Poch, Odile Lecompte

Bioinform., 2015

2014

Intelligent Integrative Knowledge Bases: Bridging Genomics, Integrative Biology and Translational Medicine.

Hoan Nguyen, Julie Dawn Thompson, Patrick Schutz, Olivier Poch

Proceedings of the Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, 2014

Heterogeneous biological data integration with declarative query language.

Hoan Nguyen, L. Michel, Julie Dawn Thompson, Olivier Poch

IBM J. Res. Dev., 2014

A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i).

Carlos Bermejo-Das-Neves, Hoan-Ngoc Nguyen, Olivier Poch, Julie Dawn Thompson

BMC Bioinform., 2014

SIBIS: a Bayesian model for inconsistent protein sequence estimation.

Walyd Khenoussi, Renaud Vanhoutrève, Olivier Poch, Julie Dawn Thompson

Bioinform., 2014

2013

PARSEC: PAtteRn SEarch and Contextualization.

Alexis Allot, Yannick-Noël Anno, Laetitia Poidevin, Raymond Ripp, Olivier Poch, Odile Lecompte

Bioinform., 2013

2012

KD4v: comprehensible knowledge discovery system for missense variant.

Tien-Dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Jean Muller, Wolfgang Raffelsberger, Nicolas Wicker, Odile Lecompte, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen

Nucleic Acids Res., 2012

Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis.

Marie-Dominique Devignes, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch

Int. J. Comput. Biol. Drug Des., 2012

MSV3d: database of human MisSense variants mapped to 3D protein structure.

Tien-Dao Luu, Alin-Mihai Rusu, Vincent Walter, Raymond Ripp, Luc Moulinier, Jean Muller, Thierry Toursel, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen

Database J. Biol. Databases Curation, 2012

2011

M-ORBIS: Mapping of mOleculaR Binding sItes and Surfaces.

Laurent-Philippe Albou, Olivier Poch, Dino Moras

Nucleic Acids Res., 2011

OrthoInspector: comprehensive orthology analysis and visual exploration.

Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte

BMC Bioinform., 2011

Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis.

Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010

Multidimensional Fitting for Multivariate Data Analysis.

Claude Berge, Nicolas Froloff, Ravi Kiran Reddy Kalathur, Myriam Maumy, Olivier Poch, Wolfgang Raffelsberger, Nicolas Wicker

J. Comput. Biol., 2010

IntelliGO: a new vector-based semantic similarity measure including annotation origin.

Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes

BMC Bioinform., 2010

Décrypthon Grid - Grid Resources Dedicated to Neuromuscular Disorders.

Nicolas Bard, Raphael Bolze, Eddy Caron, Frédéric Desprez, Michaël Heymann, Anne Friedrich, Luc Moulinier, Ngoc-Hoan Nguyen, Olivier Poch, Thierry Toursel

Proceedings of the Healthgrid Applications and Core Technologies, 2010

2009

Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods.

Valentín Ruano-Rubio, Olivier Poch, Julie Dawn Thompson

BMC Bioinform., 2009

Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis.

Mohamed Radhouene Aniba, Sophie Siguenza, Anne Friedrich, Frédéric Plewniak, Olivier Poch, Aron Marchler-Bauer, Julie Dawn Thompson

Briefings Bioinform., 2009

Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle.

Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch, Ngoc-Hoan Nguyen, Wolfgang Raffelsberger

Proceedings of the Actes du XXVIIème Congrès INFORSID, Toulouse, France, 26-29 mai 2009, 2009

2008

A maximum likelihood approximation method for Dirichlet's parameter estimation.

Nicolas Wicker, Jean Muller, Ravi Kiran Reddy Kalathur, Olivier Poch

Comput. Stat. Data Anal., 2008

A new protein linear motif benchmark for multiple sequence alignment software.

Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie Dawn Thompson

BMC Bioinform., 2008

RReportGenerator: automatic reports from routine statistical analysis using R.

Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, David Kieffer, Anne-Laure Morand, Laurent Brino, Olivier Poch

Bioinform., 2008

Introduction du nouveau centre de données biomédicales Décrypthon.

Hoan Nguyen, Guillaume Berthommier, Anne Friedrich, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Olivier Poch

Proceedings of the COnférence en Recherche d'Infomations et Applications, 2008

2007

PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease.

Agatha Schlüter, Stéphane Fourcade, Enric Domènech-Estévez, Toni Gabaldón, Jaime Huerta-Cepas, Guillaume Berthommier, Raymond Ripp, Ronald J. A. Wanders, Olivier Poch, Aurora Pujol

Nucleic Acids Res., 2007

Blast sampling for structural and functional analyses.

Anne Friedrich, Raymond Ripp, Nicolas B. Garnier, Emmanuel Bettler, Gilbert Deléage, Olivier Poch, Luc Moulinier

BMC Bioinform., 2007

A Geometric Representation of Protein Sequences.

Shengyin Gu, Olivier Poch, Bernd Hamann, Patrice Koehl

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

2006

ICDS database: interrupted CoDing sequences in prokaryotic genomes.

Emmanuel Perrodou, Caroline Deshayes, Jean Muller, Christine Schaeffer, Alain Van Dorsselaer, Raymond Ripp, Olivier Poch, Jean-Marc Reyrat, Odile Lecompte

Nucleic Acids Res., 2006

PromAn: an integrated knowledge-based web server dedicated to promoter analysis.

Aurélie Lardenois, Frédéric Chalmel, Laurent Bianchetti, José-Alain Sahel, Thierry Léveillard, Olivier Poch

Nucleic Acids Res., 2006

MACSIMS : multiple alignment of complete sequences information management system.

Julie Dawn Thompson, Arnaud Muller, Andrew M. Waterhouse, James B. Procter, Geoffrey J. Barton, Frédéric Plewniak, Olivier Poch

BMC Bioinform., 2006

MAGOS: multiple alignment and modelling server.

Nicolas B. Garnier, Anne Friedrich, Raphael Bolze, Emmanuel Bettler, Luc Moulinier, Christophe Geourjon, Julie Dawn Thompson, Gilbert Deléage, Olivier Poch

Bioinform., 2006

2005

Valid: Validation of Protein Sequence Quality Based on Multiple Alignment Data.

Laurent Bianchetti, Julie Dawn Thompson, Odile Lecompte, Frédéric Plewniak, Olivier Poch

J. Bioinform. Comput. Biol., 2005

DbW: automatic update of a functional family-specific multiple alignment.

Veronique Prigent, Jean-Claude Thierry, Olivier Poch, Frédéric Plewniak

Bioinform., 2005

GOAnno: GO annotation based on multiple alignment.

Frédéric Chalmel, Aurélie Lardenois, Julie Dawn Thompson, Jean Muller, José-Alain Sahel, Thierry Léveillard, Olivier Poch

Bioinform., 2005

2003

PipeAlign: a new toolkit for protein family analysis.

Frédéric Plewniak, Laurent Bianchetti, Yann Brelivet, Annaick Carles, Frédéric Chalmel, Odile Lecompte, Thiebaut Mochel, Luc Moulinier, Arnaud Muller, Jean Muller, Veronique Prigent, Raymond Ripp, Jean-Claude Thierry, Julie Dawn Thompson, Nicolas Wicker, Olivier Poch

Nucleic Acids Res., 2003

RASCAL: Rapid Scanning and Correction of Multiple Sequence Alignments.

Julie Dawn Thompson, Jean-Claude Thierry, Olivier Poch

Bioinform., 2003

2001

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations.

Anne Bahr, Julie Dawn Thompson, Jean-Claude Thierry, Olivier Poch

Nucleic Acids Res., 2001

2000

Ballast: Blast post-processing based on locally conserved segments.

Frédéric Plewniak, Julie Dawn Thompson, Olivier Poch

Bioinform., 2000

1999

A comprehensive comparison of multiple sequence alignment programs.

Julie Dawn Thompson, Frédéric Plewniak, Olivier Poch

Nucleic Acids Res., 1999

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

Julie Dawn Thompson, Frédéric Plewniak, Olivier Poch

Bioinform., 1999