Mark Chaisson

According to our database, Mark Chaisson authored at least 7 papers between 2004 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2016

Assembly of long error-prone reads using de Bruijn graphs.

Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W. Shen, Mark Chaisson, Pavel A. Pevzner

Proc. Natl. Acad. Sci. USA, 2016

Assembly of Long Error-Prone Reads Using de Bruijn Graphs.

Yu Lin, Max W. Shen, Jeffrey Yuan, Mark Chaisson, Pavel A. Pevzner

Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016

2013

STAR: ultrafast universal RNA-seq aligner.

Alexander Dobin, Carrie A. Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R. Gingeras

Bioinform., 2013

2012

Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR): Theory and Application.

Mark Chaisson, Glenn Tesler

BMC Bioinform., 2012

2011

Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers.

Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner

J. Comput. Biol., 2011

2006

Microinversions in mammalian evolution.

Mark Chaisson, Benjamin J. Raphael, Pavel A. Pevzner

Proc. Natl. Acad. Sci. USA, 2006

2004

Fragment assembly with short reads.

Mark Chaisson, Pavel A. Pevzner, Haixu Tang

Bioinform., 2004