Eleazar Eskin

According to our database1, Eleazar Eskin authored at least 98 papers between 1999 and 2019.

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Bibliography

2019
Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions.
Journal of Computational Biology, 2019

2018
Finding associated variants in genome-wide association studies on multiple traits.
Bioinformatics, 2018

A Unifying Framework for Summary Statistic Imputation.
Proceedings of the Research in Computational Molecular Biology, 2018

2017
Increasing the power of meta-analysis of genome-wide association studies to detect heterogeneous effects.
Bioinformatics, 2017

Improved methods for multi-trait fine mapping of pleiotropic risk loci.
Bioinformatics, 2017

Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes.
Bioinformatics, 2017

Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies.
Proceedings of the Research in Computational Molecular Biology, 2017

A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference.
Proceedings of the Research in Computational Molecular Biology, 2017

2016
Using genomic annotations increases statistical power to detect eGenes.
Bioinformatics, 2016

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.
Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016

HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads.
Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2015
A Spatial Haplotype Copying Model with Applications to Genotype Imputation.
Journal of Computational Biology, 2015

Discovering genes involved in disease and the mystery of missing heritability.
Commun. ACM, 2015

Identification of causal genes for complex traits.
Bioinformatics, 2015

Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure.
Proceedings of the Research in Computational Molecular Biology, 2015

2SNV: Quasispecies reconstruction from PacBio reads.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

2014
IPED2X: A robust pedigree reconstruction algorithm for complicated pedigrees.
J. Bioinformatics and Computational Biology, 2014

Accurate viral population assembly from ultra-deep sequencing data.
Bioinformatics, 2014

Privacy preserving protocol for detecting genetic relatives using rare variants.
Bioinformatics, 2014

Fast pairwise IBD association testing in genome-wide association studies.
Bioinformatics, 2014

A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation.
Proceedings of the Research in Computational Molecular Biology, 2014

Gene-Gene Interactions Detection Using a Two-Stage Model.
Proceedings of the Research in Computational Molecular Biology, 2014

VGA: A method for viral quasispecies assembly from ultra-deep sequencing data.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

Reconstruction of influenza a virus variants from PacBio reads.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

Identifying causal variants at loci with multiple signals of association.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

IPED2: inheritance path based pedigree reconstruction algorithm for complicated pedigrees.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Genome reassembly with high-throughput sequencing data.
BMC Genomics, 2013

Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
Bioinformatics, 2013

Efficiently Identifying Significant Associations in Genome-Wide Association Studies.
Proceedings of the Research in Computational Molecular Biology, 2013

IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data.
Proceedings of the Research in Computational Molecular Biology, 2013

eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data.
Proceedings of the Research in Computational Molecular Biology, 2013

Memory efficient assembly of human genome.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

IPEDX: An exact algorithm for pedigree reconstruction using genotype data.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Incorporating prior information into association studies.
Bioinformatics, 2012

CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping.
Proceedings of the Research in Computational Molecular Biology, 2012

Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data.
Proceedings of the Research in Computational Molecular Biology, 2012

Efficient genotyping of individuals using overlapping pool sequencing and imputation.
Proceedings of the Conference Record of the Forty Sixth Asilomar Conference on Signals, 2012

2011
Gene networks associated with conditional fear in mice identified using a systems genetics approach.
BMC Systems Biology, 2011

Assembly of non-unique insertion content using next-generation sequencing.
BMC Bioinformatics, 2011

Genotyping common and rare variation using overlapping pool sequencing.
BMC Bioinformatics, 2011

Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions.
Bioinformatics, 2011

Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity.
Bioinformatics [ISMB/ECCB], 2011

Increasing Power of Groupwise Association Test with Likelihood Ratio Test.
Proceedings of the Research in Computational Molecular Biology, 2011

Session Introduction.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

Using HLA binding prediction algorithms for epitope mapping in HIV vaccine clinical trials.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2010
Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.
NeuroImage, 2010

EMINIM: An Adaptive and Memory-Efficient Algorithm for Genotype Imputation.
Journal of Computational Biology, 2010

Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samples.
Journal of Computational Biology, 2010

Detection and reconstruction of tandemly organized de novo copy number variations.
BMC Bioinformatics, 2010

Optimal algorithms for haplotype assembly from whole-genome sequence data.
Bioinformatics [ISMB], 2010

Multi-marker tagging single nucleotide polymorphism selection using estimation of distribution algorithms.
Artificial Intelligence in Medicine, 2010

Effective Algorithms for Fusion Gene Detection.
Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

Respecting Markov Equivalence in Computing Posterior Probabilities of Causal Graphical Features.
Proceedings of the Twenty-Fourth AAAI Conference on Artificial Intelligence, 2010

2009
Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast.
PLoS Computational Biology, 2009

An Adaptive and Memory Efficient Algorithm for Genotype Imputation.
Proceedings of the Research in Computational Molecular Biology, 2009

Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samples.
Proceedings of the Research in Computational Molecular Biology, 2009

2008
Efficient Genome Wide Tagging by Reduction to SAT.
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

Increasing Power in Association Studies by Using Linkage Disequilibrium Structure and Molecular Function as Prior Information.
Proceedings of the Research in Computational Molecular Biology, 2008

2007
Incorporating homologues into Sequence Embeddings for protein Analysis.
J. Bioinformatics and Computational Biology, 2007

Discovering tightly regulated and differentially expressed gene sets in whole genome expression data.
Bioinformatics, 2007

Reconstructing the Phylogeny of Mobile Elements.
Proceedings of the Research in Computational Molecular Biology, 2007

Identification of Deletion Polymorphisms from Haplotypes.
Proceedings of the Research in Computational Molecular Biology, 2007

2006
A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions.
J. Bioinformatics and Computational Biology, 2006

Discrete profile comparison using information bottleneck.
BMC Bioinformatics, 2006

10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB).
Proceedings of the Research in Computational Molecular Biology, 2006

2005
Searching Genomes for Noncoding RNA Using FastR.
IEEE/ACM Trans. Comput. Biology Bioinform., 2005

A comparative evaluation of two algorithms for Windows Registry Anomaly Detection.
Journal of Computer Security, 2005

The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

2004
Mismatch string kernels for discriminative protein classification.
Bioinformatics, 2004

Haplotype reconstruction from genotype data using Imperfect Phylogeny.
Bioinformatics, 2004

Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs.
Proceedings of the Regulatory Genomics, 2004

From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles.
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

Combining Text Mining and Sequence Analysis to Discover Protein Functional Regions.
Proceedings of the Biocomputing 2004, 2004

Discrete profile alignment via constrained information bottleneck.
Proceedings of the Advances in Neural Information Processing Systems 17 [Neural Information Processing Systems, 2004

2003
Large scale reconstruction of haplotypes from genotype data.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

Genome-Wide Analysis of Bacterial Promoter Regions.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Laplace Propagation.
Proceedings of the Advances in Neural Information Processing Systems 16 [Neural Information Processing Systems, 2003

2002
Using Substitution Matrices to Estimate Probability Distributions for Biological Sequences.
Journal of Computational Biology, 2002

Detecting Malicious Software by Monitoring Anomalous Windows Registry Accesses.
Proceedings of the Recent Advances in Intrusion Detection, 5th International Symposium, 2002

The Spectrum Kernel: A String Kernel for SVM Protein Classification.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

A Kernel Approach for Learning from Almost Orthogonal Patterns.
Proceedings of the Principles of Data Mining and Knowledge Discovery, 2002

MET: an experimental system for Malicious Email Tracking.
Proceedings of the 2002 Workshop on New Security Paradigms, 2002

Mismatch String Kernels for SVM Protein Classification.
Proceedings of the Advances in Neural Information Processing Systems 15 [Neural Information Processing Systems, 2002

Finding composite regulatory patterns in DNA sequences.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

A Kernel Approach for Learning from almost Orthogonal Patterns.
Proceedings of the Machine Learning: ECML 2002, 2002

Adaptive Model Generation.
Proceedings of the Applications of Data Mining in Computer Security, 2002

A Geometric Framework for Unsupervised Anomaly Detection.
Proceedings of the Applications of Data Mining in Computer Security, 2002

2001
Data Mining-based Intrusion Detectors: An Overview of the Columbia IDS Project.
SIGMOD Record, 2001

MEF: Malicious Email Filter - A UNIX Mail Filter That Detects Malicious Windows Executables.
Proceedings of the FREENIX Track: 2001 USENIX Annual Technical Conference, 2001

Data Mining Methods for Detection of New Malicious Executables.
Proceedings of the 2001 IEEE Symposium on Security and Privacy, 2001

Using mixtures of common ancestors for estimating the probabilities of discrete events in biological sequences.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000
Protein Family Classification Using Sparse Markov Transducers.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

Anomaly Detection over Noisy Data using Learned Probability Distributions.
Proceedings of the Seventeenth International Conference on Machine Learning (ICML 2000), Stanford University, Stanford, CA, USA, June 29, 2000

Combining Strategies for Extracting Relations from Text Collections.
Proceedings of the 2000 ACM SIGMOD Workshop on Research Issues in Data Mining and Knowledge Discovery, 2000

Detecting Errors within a Corpus using Anomaly Detection.
Proceedings of the 6th Applied Natural Language Processing Conference, 2000

1999
Genetic programming applied to Othello: introducing students to machine learning research.
Proceedings of the 30th SIGCSE Technical Symposium on Computer Science Education, 1999

Detecting Text Similarity over Short Passages: Exploring Linguistic Feature Combinations via Machine Learning.
Proceedings of the Joint SIGDAT Conference on Empirical Methods in Natural Language Processing and Very Large Corpora, 1999

Towards Multidocument Summarization by Reformulation: Progress and Prospects.
Proceedings of the Sixteenth National Conference on Artificial Intelligence and Eleventh Conference on Innovative Applications of Artificial Intelligence, 1999


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