Markus W. Covert

According to our database, Markus W. Covert authored at least 11 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses.

Christopher J. Skalnik, Sean Y. Cheah, Mica Y. Yang, Mattheus B. Wolff, Ryan K. Spangler, Lee Talman, Jerry H. Morrison, Shayn M. Peirce, Eran Agmon, Markus W. Covert

PLoS Comput. Biol., 2023

2022

Vivarium: an interface and engine for integrative multiscale modeling in computational biology.

Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert

Bioinform., 2022

2016

Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments.

David A. Van Valen, Takamasa Kudo, Keara M. Lane, Derek N. Macklin, Nicolas T. Quach, Mialy M. DeFelice, Inbal Maayan, Yu Tanouchi, Euan A. Ashley, Markus W. Covert

PLoS Comput. Biol., 2016

2015

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

Jonathan R. Karr, Alex H. Williams, Jeremy D. Zucker, Andreas Raue, Bernhard Steiert, Jens Timmer, Clemens Kreutz, Simon Wilkinson, Brandon A. Allgood, Brian M. Bot, Bruce R. Hoff, Michael R. Kellen, Markus W. Covert, Gustavo A. Stolovitzky, Pablo Meyer

PLoS Comput. Biol., 2015

NetworkPainter: dynamic intracellular pathway animation in Cytobank.

Jonathan R. Karr, Harendra Guturu, Edward Y. Chen, Stuart L. Blair, Jonathan M. Irish, Nikesh Kotecha, Markus W. Covert

BMC Bioinform., 2015

2014

WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions.

Jonathan R. Karr, Nolan C. Phillips, Markus W. Covert

Database J. Biol. Databases Curation, 2014

2013

WholeCellKB: model organism databases for comprehensive whole-cell models.

Jonathan R. Karr, Jayodita C. Sanghvi, Derek N. Macklin, Abhishek Arora, Markus W. Covert

Nucleic Acids Res., 2013

WholeCellViz: data visualization for whole-cell models.

Ruby Lee, Jonathan R. Karr, Markus W. Covert

BMC Bioinform., 2013

2012

Determining Host Metabolic Limitations on Viral Replication via Integrated Modeling and Experimental Perturbation.

Elsa W. Birch, Nicholas A. Ruggero, Markus W. Covert

PLoS Comput. Biol., 2012

2009

A dynamic network of transcription in LPS-treated human subjects.

Junhee Seok, Wenzhong Xiao, Lyle L. Moldawer, Ronald W. Davis, Markus W. Covert

BMC Syst. Biol., 2009

2008

Integrating metabolic, transcriptional regulatory and signal transduction models in <i>Escherichia coli</i>.

Markus W. Covert, Nan Xiao, Tiffany J. Chen, Jonathan R. Karr

Bioinform., 2008