Mauricio Soto Gomez

According to our database, Mauricio Soto Gomez authored at least 16 papers between 2017 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

On recognizing graphs representing persistent perfect phylogenies.

Paola Bonizzoni, Gianluca Della Vedova, Mauricio Soto Gomez, Gabriella Trucco

Nat. Comput., September, 2025

Intrinsic-dimension analysis for guiding dimensionality reduction and data fusion in multi-omics data processing.

Jessica Gliozzo, Mauricio Soto Gomez, Valentina Guarino, Arturo Bonometti, Alberto Cabri, Emanuele Cavalleri, Justin T. Reese, Peter N. Robinson, Marco Mesiti, Giorgio Valentini, Elena Casiraghi

Artif. Intell. Medicine, 2025

2024

SPIREX: Improving LLM-based relation extraction from RNA-focused scientific literature using graph machine learning.

Emanuele Cavalleri, Mauricio Soto Gomez, Ali Pashaeibarough, Dario Malchiodi, J. Harry Caufield, Justin T. Reese, Chris Mungall, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

Proceedings of Workshops at the 50th International Conference on Very Large Data Bases, 2024

Initial achievements in relation extraction from RNA-focused scientific papers.

Emanuele Cavalleri, Mauricio Soto Gomez, Ali Pashaeibarough, Dario Malchiodi, J. Harry Caufield, Justin T. Reese, Christopher J. Mungall, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

Proceedings of the 32nd Symposium of Advanced Database Systems, 2024

2023

Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison.

Simone Ciccolella, Gianluca Della Vedova, Vladimir Filipovic, Mauricio Soto Gomez

Algorithms, July, 2023

The promises of large language models for protein design and modeling.

Giorgio Valentini, Dario Malchiodi, Jessica Gliozzo, Marco Mesiti, Mauricio Soto Gomez, Alberto Cabri, Justin T. Reese, Elena Casiraghi, Peter N. Robinson

Frontiers Bioinform., May, 2023

RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules.

Emanuele Cavalleri, Alberto Cabri, Mauricio Soto Gomez, Sara Bonfitto, Paolo Perlasca, Jessica Gliozzo, Tiffany J. Callahan, Justin T. Reese, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

CoRR, 2023

Towards the Construction of an RNA-centered Knowledge Graph.

Emanuele Cavalleri, Sara Bonfitto, Alberto Cabri, Jessica Gliozzo, Paolo Perlasca, Mauricio Soto Gomez, Gabriella Trucco, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

Proceedings of the 31st Symposium of Advanced Database Systems, 2023

A Meta-Graph for the Construction of an RNA-Centered Knowledge Graph.

Emanuele Cavalleri, Sara Bonfitto, Alberto Cabri, Jessica Gliozzo, Paolo Perlasca, Mauricio Soto Gomez, Gabriella Trucco, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

Proceedings of the Bioinformatics and Biomedical Engineering, 2023

Plastic: An Easy to Use and Modular Tool for Benchmarking Tumor Phylogeny Reconstruction Pipelines.

Akshay Juyal, Zahra Tayebi, Alexander Zelikovsky, Mauricio Soto Gomez, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson

Proceedings of the Computational Advances in Bio and Medical Sciences, 2023

2021

Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.

Simone Ciccolella, Camir Ricketts, Mauricio Soto Gomez, Murray Patterson, Dana Silverbush, Paola Bonizzoni, Iman Hajirasouliha, Gianluca Della Vedova

Bioinform., 2021

2019

Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach.

Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto Gomez

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Modelling and Linking Company Data in the euBusinessGraph Platform.

Andrea Maurino, Anisa Rula, Bjørn Marius von Zernichow, Mauricio Soto Gomez, Brian Elvesæter, Dumitru Roman

Proceedings of the 5th Workshop on Data Science for Macro-modeling with Financial and Economic Datasets, 2019

2018

gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data.

Simone Ciccolella, Mauricio Soto Gomez, Murray Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni

Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

2017

Character-Based Phylogeny Construction and Its Application to Tumor Evolution.

Gianluca Della Vedova, Murray Patterson, Raffaella Rizzi, Mauricio Soto Gomez

Proceedings of the Unveiling Dynamics and Complexity, 2017

Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via ILP.

Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto Gomez

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017