Emanuele Cavalleri

According to our database, Emanuele Cavalleri authored at least 15 papers between 2023 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Better Negatives, Better Predictions: Negative Sample Selection Strategies for Enhancing Biomedical KG Edge Classification.

Emanuele Cavalleri, Miad Alavinezhad, Marco Mesiti, Dario Malchiodi

Proceedings of the Companion Proceedings of the ACM Web Conference 2026, 2026

2025

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties.

Emanuele Cavalleri, Paolo Perlasca, Marco Mesiti

CoRR, August, 2025

Intrinsic-dimension analysis for guiding dimensionality reduction and data fusion in multi-omics data processing.

Jessica Gliozzo, Mauricio Soto Gomez, Valentina Guarino, Arturo Bonometti, Alberto Cabri, Emanuele Cavalleri, Justin T. Reese, Peter N. Robinson, Marco Mesiti, Giorgio Valentini, Elena Casiraghi

Artif. Intell. Medicine, 2025

Prompt engineering approaches for working with biomedical knowledge graphs through LLMs.

Marco Mesiti, Emanuele Cavalleri, Matteo Castagna, Paolo Perlasca, Darya Shlyk

Proceedings of the Joint Proceedings of the Thematic Workshops at Ital-IA 2025 colocated with the 5th National Conference on Artificial Intelligence, 2025

A Semantic Schema-Based Catalog for Identifying Joinable Columns via LLMs.

Emanuele Cavalleri, Matteo Castagna, Marco Mesiti

Proceedings of the Flexible Query Answering Systems - 16th International Conference, 2025

2024

SPIREX: Improving LLM-based relation extraction from RNA-focused scientific literature using graph machine learning.

Emanuele Cavalleri, Mauricio Soto Gomez, Ali Pashaeibarough, Dario Malchiodi, J. Harry Caufield, Justin T. Reese, Chris Mungall, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

Proceedings of Workshops at the 50th International Conference on Very Large Data Bases, 2024

Initial achievements in relation extraction from RNA-focused scientific papers.

Emanuele Cavalleri, Mauricio Soto Gomez, Ali Pashaeibarough, Dario Malchiodi, J. Harry Caufield, Justin T. Reese, Christopher J. Mungall, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

Proceedings of the 32nd Symposium of Advanced Database Systems, 2024

Construction and Enhancement of an RNA-Based Knowledge Graph for Discovering New RNA Drugs.

Emanuele Cavalleri, Marco Mesiti

Proceedings of the 40th IEEE International Conference on Data Engineering, 2024

On the Extraction of Meaningful RNA Interactions from Scientific Publications through LLMs and SPIRES.

Emanuele Cavalleri, Marco Mesiti

Proceedings of the Workshops of the EDBT/ICDT 2024 Joint Conference co-located with the EDBT/ICDT 2024 Joint Conference, 2024

Fine-Tuning of Conditional Transformers Improves the Generation of Functionally Characterized Proteins.

Marco Nicolini, Dario Malchiodi, Alberto Cabri, Emanuele Cavalleri, Marco Mesiti, Alberto Paccanaro, Peter N. Robinson, Justin T. Reese, Elena Casiraghi, Giorgio Valentini

Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies, 2024

REAL: A Retrieval-Augmented Entity Linking Approach for Biomedical Concept Recognition.

Darya Shlyk, Tudor Groza, Marco Mesiti, Stefano Montanelli, Emanuele Cavalleri

Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, 2024

2023

RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules.

Emanuele Cavalleri, Alberto Cabri, Mauricio Soto Gomez, Sara Bonfitto, Paolo Perlasca, Jessica Gliozzo, Tiffany J. Callahan, Justin T. Reese, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

CoRR, 2023

An Open-Source Knowledge Graph Ecosystem for the Life Sciences.

Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter

CoRR, 2023

Towards the Construction of an RNA-centered Knowledge Graph.

Emanuele Cavalleri, Sara Bonfitto, Alberto Cabri, Jessica Gliozzo, Paolo Perlasca, Mauricio Soto Gomez, Gabriella Trucco, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

Proceedings of the 31st Symposium of Advanced Database Systems, 2023

A Meta-Graph for the Construction of an RNA-Centered Knowledge Graph.

Emanuele Cavalleri, Sara Bonfitto, Alberto Cabri, Jessica Gliozzo, Paolo Perlasca, Mauricio Soto Gomez, Gabriella Trucco, Elena Casiraghi, Giorgio Valentini, Marco Mesiti

Proceedings of the Bioinformatics and Biomedical Engineering, 2023