Mehdi Sadeghi

Orcid: 0000-0001-6704-4591

According to our database1, Mehdi Sadeghi authored at least 43 papers between 2006 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
wpLogicNet: logic gate and structure inference in gene regulatory networks.
Bioinform., February, 2023

2022
A new survival analysis model in adjuvant Tamoxifen-treated breast cancer patients using manifold-based semi-supervised learning.
J. Comput. Sci., 2022

Determining the adjusted initial treatment dose of warfarin anticoagulant medicine using kernel-based support vector regression.
Comput. Methods Programs Biomed., 2022

Prospects and challenges of cancer systems medicine: from genes to disease networks.
Briefings Bioinform., 2022

2020
A Network-Based Comparison Between Molecular Apocrine Breast Cancer Tumor and Basal and Luminal Tumors by Joint Graphical Lasso.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Inter-protein residue covariation information unravels physically interacting protein dimers.
BMC Bioinform., 2020

LogicNet: probabilistic continuous logics in reconstructing gene regulatory networks.
BMC Bioinform., 2020

2018
Modeling the probability distribution of the bacterial burst size via a game-theoretic approach.
J. Bioinform. Comput. Biol., 2018

Visualization in the integrated SimPhoNy multiscale simulation framework.
Comput. Phys. Commun., 2018

Assessing the impact of exact reads on reducing the error rate of read mapping.
BMC Bioinform., 2018

2017
HIV-1-infected T-cells dynamics and prognosis: An evolutionary game model.
Comput. Methods Programs Biomed., 2017

PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities.
BMC Bioinform., 2017

Confident gene activity prediction based on single histone modification H2BK5ac in human cell lines.
BMC Bioinform., 2017

2016
Honey bee-inspired algorithms for SNP haplotype reconstruction problem.
J. Exp. Theor. Artif. Intell., 2016

Seismic vulnerability assessment and risk modelling of telecommunication systems.
Int. J. Crit. Infrastructures, 2016

2015
Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach.
J. Bioinform. Comput. Biol., 2015

Increased robustness of early embryogenesis through collective decision-making by key transcription factors.
BMC Syst. Biol., 2015

Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms.
BMC Bioinform., 2015

Inferring interaction type in gene regulatory networks using co-expression data.
Algorithms Mol. Biol., 2015

Erratum to: Inferring interaction type in gene regulatory networks using co-expression data.
Algorithms Mol. Biol., 2015

2014
Using data fusion for scoring reliability of protein-protein interactions.
J. Bioinform. Comput. Biol., 2014

Learning by abstraction: Hierarchical classification model using evidential theoretic approach and Bayesian ensemble model.
Neurocomputing, 2014

Efficient fast heuristic algorithms for minimum error correction haplotyping from SNP fragments.
Int. J. Comput. Biol. Drug Des., 2014

Using artificial immunity network for face verification.
Int. Arab J. Inf. Technol., 2014

Network-based approach reveals Y chromosome influences prostate cancer susceptibility.
Comput. Biol. Medicine, 2014

ARYANA: Aligning Reads by Yet Another Approach.
BMC Bioinform., 2014

Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals.
Biosyst., 2014

2013
Evaluation of Fuzzy Linear Programming Application in Energy Models.
Int. J. Energy Optim. Eng., 2013

2011
Modeling and implementing an agent-based system for prediction of protein relative solvent accessibility.
Expert Syst. Appl., 2011

A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM.
Comput. Biol. Chem., 2011

2010
Tag SNP selection via a genetic algorithm.
J. Biomed. Informatics, 2010

Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces Cerevisiae.
BMC Syst. Biol., 2010

A pairwise residue contact area-based mean force potential for discrimination of native protein structure.
BMC Bioinform., 2010

2009
STON: A novel method for protein three-dimensional structure comparison.
Comput. Biol. Medicine, 2009

New scoring schema for finding motifs in DNA Sequences.
BMC Bioinform., 2009

Global haplotype partitioning for maximal associated SNP pairs.
BMC Bioinform., 2009

F.C.A: Designing a fuzzy clustering algorithm for haplotype assembly.
Proceedings of the FUZZ-IEEE 2009, 2009

2008
PROSIGN: A method for protein secondary structure assignment based on three-dimensional coordinates of consecutive C<sub>alpha</sub> atoms.
Comput. Biol. Chem., 2008

A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins.
BMC Bioinform., 2008

Impact of residue accessible surface area on the prediction of protein secondary structures.
BMC Bioinform., 2008

2007
A method for protein accessibility prediction based on residue types and conformational states.
Comput. Biol. Chem., 2007

2006
Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks.
Comput. Biol. Chem., 2006

Impact of RNA structure on the prediction of donor and acceptor splice sites.
BMC Bioinform., 2006


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