Gary D. Bader
Orcid: 0000-0003-0185-8861
According to our database1,
Gary D. Bader
authored at least 76 papers
between 2000 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
Bioinform., January, 2023
CoRR, 2023
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning.
CoRR, 2023
Spatially Resolved Gene Expression Prediction from Histology Images via Bi-modal Contrastive Learning.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023
Open Domain Multi-document Summarization: A Comprehensive Study of Model Brittleness under Retrieval.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2023, 2023
MAESTER: Masked Autoencoder Guided Segmentation at Pixel Resolution for Accurate, Self-Supervised Subcellular Structure Recognition.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023
2022
Proceedings of the 21st Workshop on Biomedical Language Processing, 2022
2021
A flexible search system for high-accuracy identification of biological entities and molecules.
J. Open Source Softw., 2021
Briefings Bioinform., 2021
Proceedings of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, 2021
2020
Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data.
PLoS Comput. Biol., 2020
Nucleic Acids Res., 2020
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks.
F1000Research, 2020
2019
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
J. Integr. Bioinform., 2019
End-to-end Named Entity Recognition and Relation Extraction using Pre-trained Language Models.
CoRR, 2019
2018
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.
J. Integr. Bioinform., 2018
F1000Research, 2018
Bioinform., 2018
2017
Proceedings of the 2017 Winter Simulation Conference, 2017
2016
Scientometrics, 2016
PLoS Comput. Biol., 2016
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.
J. Integr. Bioinform., 2016
F1000Research, 2016
Predicting physiologically relevant SH3 domain mediated protein-protein interactions in yeast.
Bioinform., 2016
Bioinform., 2016
Proceedings of the IEEE International High Level Design Validation and Test Workshop, 2016
2015
J. Integr. Bioinform., 2015
F1000Research, 2015
Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in <i>Escherichia coli</i>.
Bioinform., 2015
Algorithms Mol. Biol., 2015
Erratum to: Inferring interaction type in gene regulatory networks using co-expression data.
Algorithms Mol. Biol., 2015
2014
Enrichment Map - a Cytoscape app to visualize and explore OMICs pathway enrichment results.
F1000Research, 2014
HyperModules: identifying clinically and phenotypically significant network modules with disease mutations for biomarker discovery.
Bioinform., 2014
2013
BMC Bioinform., 2013
GeStoDifferent: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process.
Bioinform., 2013
2012
Multiple Genetic Interaction Experiments Provide Complementary Information Useful for Gene Function Prediction.
PLoS Comput. Biol., 2012
Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study.
BMC Syst. Biol., 2012
2011
Source Code Biol. Medicine, 2011
PLoS Comput. Biol., 2011
Nucleic Acids Res., 2011
BMC Bioinform., 2011
A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence.
Bioinform., 2011
Database J. Biol. Databases Curation, 2011
Database J. Biol. Databases Curation, 2011
Database J. Biol. Databases Curation, 2011
2010
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.
Nucleic Acids Res., 2010
Nucleic Acids Res., 2010
An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology.
BMC Bioinform., 2010
BMC Bioinform., 2010
Bioinform., 2010
2008
2007
From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research.
PLoS Comput. Biol., 2007
2006
cPath: open source software for collecting, storing, and querying biological pathways.
BMC Bioinform., 2006
2003
PreBIND and Textomy - mining the biomedical literature for protein-protein interactions using a support vector machine.
BMC Bioinform., 2003
An automated method for finding molecular complexes in large protein interaction networks.
BMC Bioinform., 2003
2002
SeqHound: biological sequence and structure database as a platform for bioinformatics research.
BMC Bioinform., 2002
Proceedings of the Essentials of Genomics and Bioinformatics, 2002
2001
2000
BIND-a data specification for storing and describing biomolecular interactions, molecular complexes and pathways.
Bioinform., 2000