Miguel Machuqueiro

According to our database, Miguel Machuqueiro authored at least 14 papers between 2013 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Reinforcement-guided generative protein language models enable de novo design of highly diverse AAV capsids.

Lucas Ferraz, Ana F. Rodrigues, Pedro Giesteira Cotovio, Mafalda Ventura, Gabriela Silva, Ana Sofia Coroadinha, Miguel Machuqueiro, Catia Pesquita

CoRR, March, 2026

Force Field and Membrane Patch Size Effects on Atomistic Models of Aquaporin-7.

Marta S. P. Batista, Miguel Machuqueiro, Bruno L. Victor

J. Chem. Inf. Model., 2026

2024

High Charge Density in Peptide Dendrimers is Required to Destabilize Membranes: Insights into Endosome Evasion.

Filipe E. P. Rodrigues, Tamis Darbre, Miguel Machuqueiro

J. Chem. Inf. Model., 2024

Is There a Functional Role for the Knotted Topology in Protein UCH-L1?

Sara G. F. Ferreira, Manoj K. Sriramoju, Shang-Te Danny Hsu, Patrícia F. N. Faísca, Miguel Machuqueiro

J. Chem. Inf. Model., 2024

p<i>K</i>_a Calculations of GPCRs: Understanding Protonation States in Receptor Activation.

Carlos A. V. Barreto, João N. M. Vitorino, Pedro B. P. S. Reis, Miguel Machuqueiro, Irina S. Moreira

J. Chem. Inf. Model., 2024

2023

Arginine Residues Modulate the Membrane Interactions of pHLIP Peptides.

Tomás F. D. Silva, Hannah Visca, Craig Klumpp, Oleg A. Andreev, Yana K. Reshetnyak, Miguel Machuqueiro

J. Chem. Inf. Model., July, 2023

Interfacial Dynamics and Growth Modes of β₂-Microglobulin Dimers.

Nuno F. B. Oliveira, Filipe E. P. Rodrigues, João N. M. Vitorino, Patrícia F. N. Faísca, Miguel Machuqueiro

J. Chem. Inf. Model., July, 2023

2022

Novel US-CpHMD Protocol to Study the Protonation-Dependent Mechanism of the ATP/ADP Carrier.

Nuno F. B. Oliveira, Miguel Machuqueiro

J. Chem. Inf. Model., 2022

Optimization of an <i>in Silico</i> Protocol Using Probe Permeabilities to Identify Membrane Pan-Assay Interference Compounds.

Pedro R. Magalhães, Pedro B. P. S. Reis, Diogo Vila-Viçosa, Miguel Machuqueiro, Bruno L. Victor

J. Chem. Inf. Model., 2022

2021

pKPDB: a protein data bank extension database of pKa and pI theoretical values.

Pedro B. P. S. Reis, Djork-Arné Clevert, Miguel Machuqueiro

Bioinform., 2021

2020

PypKa: A Flexible Python Module for Poisson-Boltzmann-Based pKa Calculations.

Pedro B. P. S. Reis, Diogo Vila-Viçosa, Walter Rocchia, Miguel Machuqueiro

J. Chem. Inf. Model., 2020

2015

Correction to "Structural Effects of pH and Deacylation on Surfactant Protein C in an Organic Solvent Mixture: A Constant-pH MD Study".

Catarina A. Carvalheda, Sara R. R. Campos, Miguel Machuqueiro, António M. Baptista

J. Chem. Inf. Model., 2015

2014

A Simulated Intermediate State for Folding and Aggregation Provides Insights into ΔN6 β₂-Microglobulin Amyloidogenic Behavior.

Sílvia G. Estácio, Heinrich Krobath, Diogo Vila-Viçosa, Miguel Machuqueiro, Eugene I. Shakhnovich, Patrícia F. N. Faísca

PLoS Comput. Biol., 2014

2013

Structural Effects of pH and Deacylation on Surfactant Protein C in an Organic Solvent Mixture: A Constant-pH MD Study.

Catarina A. Carvalheda, Sara R. R. Campos, Miguel Machuqueiro, António M. Baptista

J. Chem. Inf. Model., 2013