Catia Pesquita

Proceedings of the 5th Workshop on Semantic Web solutions for large-scale biomedical data analytics co-located with the Extended Semantic Web Conference (ESWC 2022), 2022

VOWLExplain: Knowledge Graph visualization for Explainable Artificial Intelligence.

[BibT_eX]

[DOI]

Filipa Serrano

Susana Nunes

Proceedings of the Seventh International Workshop on the Visualization and Interaction for Ontologies and Linked Data co-located with the 21st International Semantic Web Conference (ISWC 2022), 2022

Results of the Ontology Alignment Evaluation Initiative 2022.

[BibT_eX]

[DOI]

Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

Matcha and Matcha-DL results for OAEI 2022.

[BibT_eX]

[DOI]

Pedro Cotovio

Patrícia Eugénio

Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

21th International Workshop on Data Mining in Bioinformatics (BIOKDD 2022).

[BibT_eX]

[DOI]

Proceedings of the KDD '22: The 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 14, 2022

The Supervised Semantic Similarity Toolkit.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web: ESWC 2022 Satellite Events - Hersonissos, Crete, Greece, May 29, 2022

Extending AgreementMakerLight to Perform Holistic Ontology Matching.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web: ESWC 2022 Satellite Events - Hersonissos, Crete, Greece, May 29, 2022

Matching Multiple Ontologies to Build a Knowledge Graph for Personalized Medicine.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - 19th International Conference, 2022

Explaining Artificial Intelligence Predictions of Disease Progression with Semantic Similarity.

[BibT_eX]

[DOI]

Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to, 2022

Hierarchical Modelling for ALS Prognosis: Predicting the Progression Towards Critical Events.

[BibT_eX]

[DOI]

Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to, 2022

2021

Predicting Gene-Disease Associations with Knowledge Graph Embeddings over Multiple Ontologies.

[BibT_eX]

[DOI]

Susana Nunes

CoRR, 2021

Is there data leakage in protein-protein interaction prediction using knowledge graphs?

[BibT_eX]

[DOI]

Proceedings of the ISWC 2021 Posters, 2021

Integrating knowledge graphs for explainable artificial intelligence in biomedicine.

[BibT_eX]

[DOI]

Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

Results of the Ontology Alignment Evaluation Initiative 2021.

[BibT_eX]

[DOI]

Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

Challenges of evaluating complex alignments.

[BibT_eX]

[DOI]

Beatriz Lima

Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

Pattern-Guided Association Rule Mining for Complex Ontology Alignment.

[BibT_eX]

[DOI]

Beatriz Lima

Proceedings of the ISWC 2021 Posters, 2021

VOWLMap: graph-based ontology alignment visualization and editing.

[BibT_eX]

[DOI]

Ana Guerreiro

Proceedings of the ISWC 2021 Posters, 2021

AML and AMLC results for OAEI 2021.

[BibT_eX]

[DOI]

Beatriz Lima

Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

Results of SemTab 2021.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web Challenge on Tabular Data to Knowledge Graph Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

evoKGsim+: A Framework for Tailoring Knowledge Graph-Based Similarity for Supervised Learning.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web: ESWC 2021 Satellite Events, 2021

Towards Semantic Integration for Explainable Artificial Intelligence in the Biomedical Domain.

[BibT_eX]

[DOI]

Cássia Trojahn dos Santos

Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies, 2021

2020

Towards evaluating complex ontology alignments.

[BibT_eX]

[DOI]

Ondrej Zamazal

Knowl. Eng. Rev., 2020

Crowd-assessing quality in uncertain data linking datasets.

[BibT_eX]

[DOI]

Knowl. Eng. Rev., 2020

Evolving knowledge graph similarity for supervised learning in complex biomedical domains.

[BibT_eX]

[DOI]

BMC Bioinform., 2020

A Collection of Benchmark Data Sets for Knowledge Graph-based Similarity in the Biomedical Domain.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2020

Results of the Ontology Alignment Evaluation Initiative 2020.

[BibT_eX]

[DOI]

Proceedings of the 15th International Workshop on Ontology Matching co-located with the 19th International Semantic Web Conference (ISWC 2020), 2020

OAEI 2020 results for AML and AMLC.

[BibT_eX]

[DOI]

Proceedings of the 15th International Workshop on Ontology Matching co-located with the 19th International Semantic Web Conference (ISWC 2020), 2020

Learning reference alignments for ontology matching within and across domains.

[BibT_eX]

[DOI]

Proceedings of the 15th International Workshop on Ontology Matching co-located with the 19th International Semantic Web Conference (ISWC 2020), 2020

2019

Visualization and interaction for ontologies and linked data - Editorial.

[BibT_eX]

[DOI]

J. Web Semant., 2019

User validation in ontology alignment: functional assessment and impact.

[BibT_eX]

[DOI]

Knowl. Eng. Rev., 2019

AML and AMLC Results for OAEI 2019.

[BibT_eX]

[DOI]

Proceedings of the 14th International Workshop on Ontology Matching co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

Results of the Ontology Alignment Evaluation Initiative 2019.

[BibT_eX]

[DOI]

Proceedings of the 14th International Workshop on Ontology Matching co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

2018

The properties of property alignment on the semantic web.

[BibT_eX]

[DOI]

Int. J. Metadata Semant. Ontologies, 2018

Improving the interoperability of biomedical ontologies with compound alignments.

[BibT_eX]

[DOI]

Daniela Oliveira

J. Biomed. Semant., 2018

Tackling the challenges of matching biomedical ontologies.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2018

Complex matching for multiple ontologies: an exploratory study.

[BibT_eX]

[DOI]

Madalena Pavão

Proceedings of the 13th International Workshop on Ontology Matching co-located with the 17th International Semantic Web Conference, 2018

Results of AML participation in OAEI 2018.

[BibT_eX]

[DOI]

Booma Sowkarthiga Balasubramani

Proceedings of the 13th International Workshop on Ontology Matching co-located with the 17th International Semantic Web Conference, 2018

Results of the Ontology Alignment Evaluation Initiative 2018.

[BibT_eX]

[DOI]

Proceedings of the 13th International Workshop on Ontology Matching co-located with the 17th International Semantic Web Conference, 2018

A Framework to Conduct and Report on Empirical User Studies in Semantic Web Contexts.

[BibT_eX]

[DOI]

Proceedings of the Knowledge Engineering and Knowledge Management, 2018

2017

Special issue on ontology and linked data matching.

[BibT_eX]

[DOI]

Semantic Web, 2017

Results of AML in OAEI 2017.

[BibT_eX]

[DOI]

Booma S. Balasubramani

Proceedings of the 12th International Workshop on Ontology Matching co-located with the 16th International Semantic Web Conference (ISWC 2017), 2017

Results of the Ontology Alignment Evaluation Initiative 2017.

[BibT_eX]

[DOI]

Proceedings of the 12th International Workshop on Ontology Matching co-located with the 16th International Semantic Web Conference (ISWC 2017), 2017

Semantic Data Integration.

[BibT_eX]

[DOI]

Michelle Cheatham

Proceedings of the Handbook of Big Data Technologies, 2017

2016

Workshop Summary.

[BibT_eX]

[DOI]

Proceedings of the Second International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 15th International Semantic Web Conference, 2016

OAEI 2016 results of AML.

[BibT_eX]

[DOI]

Booma S. Balasubramani

Proceedings of the 11th International Workshop on Ontology Matching co-located with the 15th International Semantic Web Conference (ISWC 2016), 2016

User Validation in Ontology Alignment.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - ISWC 2016, 2016

Results of the Ontology Alignment Evaluation Initiative 2016.

[BibT_eX]

[DOI]

Proceedings of the 11th International Workshop on Ontology Matching co-located with the 15th International Semantic Web Conference (ISWC 2016), 2016

Ontology-Based Approach for Heterogeneity Analysis of EA Models.

[BibT_eX]

[DOI]

Proceedings of the Business Process Management Workshops, 2016

An Ontological Matching Approach for Enterprise Architecture Model Analysis.

[BibT_eX]

[DOI]

Marzieh Bakhshandeh

Cássia Trojahn dos Santos

José Borbinha

Proceedings of the Business Information Systems - 19th International Conference, 2016

2015

AML results for OAEI 2015.

[BibT_eX]

[DOI]

Proceedings of the 10th International Workshop on Ontology Matching collocated with the 14th International Semantic Web Conference (ISWC 2015), 2015

Results of the Ontology Alignment Evaluation Initiative 2015.

[BibT_eX]

[DOI]

Ondrej Zamazal

Proceedings of the 10th International Workshop on Ontology Matching collocated with the 14th International Semantic Web Conference (ISWC 2015), 2015

Ontology matching techniques for enterprise architecture models.

[BibT_eX]

[DOI]

Marzieh Bakhshandeh

José Borbinha

Proceedings of the 10th International Workshop on Ontology Matching collocated with the 14th International Semantic Web Conference (ISWC 2015), 2015

Inferring logical definitions using compound ontology matching.

[BibT_eX]

[DOI]

Daniela Oliveira

Proceedings of the International Conference on Biomedical Ontology, 2015

Compound matching of biomedical ontologies.

[BibT_eX]

[DOI]

Daniela Oliveira

Proceedings of the International Conference on Biomedical Ontology, 2015

Towards visualizing the mapping incoherences in Bioportal.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Biomedical Ontology, 2015

Visualization and editing of biomedical ontology alignments in AgreementMakerLight.

[BibT_eX]

[DOI]

Catarina Martins

Proceedings of the International Conference on Biomedical Ontology, 2015

The Process Model Matching Contest 2015.

[BibT_eX]

[DOI]

Proceedings of the Enterprise Modelling and Information Systems Architectures, 2015

2014

The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2014

Building reference alignments for compound matching of multiple ontologies using OBO cross-products.

[BibT_eX]

[DOI]

Proceedings of the 9th International Workshop on Ontology Matching collocated with the 13th International Semantic Web Conference (ISWC 2014), 2014

AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching.

[BibT_eX]

[DOI]

Proceedings of the ISWC 2014 Posters & Demonstrations Track a track within the 13th International Semantic Web Conference, 2014

AgreementMakerLight results for OAEI 2014.

[BibT_eX]

[DOI]

Proceedings of the 9th International Workshop on Ontology Matching collocated with the 13th International Semantic Web Conference (ISWC 2014), 2014

Towards Annotating Potential Incoherences in BioPortal Mappings.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - ISWC 2014, 2014

Introduction to VISUAL 2014 - Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics.

[BibT_eX]

[DOI]

Proceedings of the Knowledge Engineering and Knowledge Management, 2014

Towards Visualizing the Alignment of Large Biomedical Ontologies.

[BibT_eX]

[DOI]

Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014

2013

Ontology alignment repair through modularization and confidence-based heuristics.

[BibT_eX]

[DOI]

CoRR, 2013

What's in a 'nym'? Synonyms in Biomedical Ontology Matching.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - ISWC 2013, 2013

To repair or not to repair: reconciling correctness and coherence in ontology reference alignments.

[BibT_eX]

[DOI]

Proceedings of the 8th International Workshop on Ontology Matching co-located with the 12th International Semantic Web Conference (ISWC 2013), 2013

AgreementMakerLight results for OAEI 2013.

[BibT_eX]

[DOI]

Proceedings of the 8th International Workshop on Ontology Matching co-located with the 12th International Semantic Web Conference (ISWC 2013), 2013

The AgreementMakerLight Ontology Matching System.

[BibT_eX]

[DOI]

Proceedings of the On the Move to Meaningful Internet Systems: OTM 2013 Conferences, 2013

Digital preservation of epidemic resources: coupling metadata and ontologies.

[BibT_eX]

[DOI]

Proceedings of the 10th International Conference on Digital Preservation, 2013

2012

Predicting the Extension of Biomedical Ontologies.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2012

Testing the AgreementMaker System in the Anatomy Task of OAEI 2012

[BibT_eX]

[DOI]

CoRR, 2012

Bringing epidemiology into the Semantic Web.

[BibT_eX]

[DOI]

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

2011

Using AgreementMaker to align ontologies for OAEI 2011.

[BibT_eX]

[DOI]

Proceedings of the 6th International Workshop on Ontology Matching, 2011

The Biomedical Ontology Applications (BOA) Framework.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Where GO is Going and What it Means for Ontology Extension.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Biomedical Ontology Matching Using the AgreementMaker System.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010

BLOOMS on AgreementMaker: results for OAEI 2010.

[BibT_eX]

[DOI]

Proceedings of the 5th International Workshop on Ontology Matching (OM-2010), 2010

2009

Semantic Similarity in Biomedical Ontologies.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2009

Measuring coherence between electronic and manual annotations in biological databases.

[BibT_eX]

[DOI]

Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

Identifying Gene Ontology Areas for Automated Enrichment.

[BibT_eX]

[DOI]

Tiago Grego

Proceedings of the Distributed Computing, 2009

2008

Metrics for GO based protein semantic similarity: a systematic evaluation.

[BibT_eX]

[DOI]

Hugo P. Bastos

António E. N. Ferreira

André O. Falcão