Mikhail Shugay

According to our database, Mikhail Shugay authored at least 11 papers between 2012 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2025

Neighborhood enrichment for the identification of antigen-specific T-cell receptors.

Kseniia R. Lupyr, Pavel V. Shelyakin, Konstantin A. Sobyanin, Ruslan A. Martynov, Vladimir S. Popov, Sevastyan O. Rabdano, Olga S. Nikitina, Yurii G. Yanushevich, Ilya A Kofiadi, Dmitry B. Staroverov, Mikhail Shugay, Dmitriy M. Chudakov, Olga V. Britanova

Briefings Bioinform., 2025

2024

Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen.

Vadim K. Karnaukhov, Dmitrii S. Shcherbinin, Anton O. Chugunov, Dmitriy M. Chudakov, Roman G. Efremov, Ivan V. Zvyagin, Mikhail Shugay

Nat. Comput. Sci., July, 2024

2020

Comprehensive analysis of structural and sequencing data reveals almost unconstrained chain pairing in TCRαβ complex.

Dmitrii S. Shcherbinin, Vlad A. Belousov, Mikhail Shugay

PLoS Comput. Biol., 2020

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.

Dmitry V. Bagaev, Renske M. A. Vroomans, Jerome Samir, Ulrik Stervbo, Cristina Rius, Garry Dolton, Alexander Greenshields-Watson, Meriem Attaf, Evgeny S. Egorov, Ivan V. Zvyagin, Nina Babel, David K. Cole, Andrew J. Godkin, Andrew K. Sewell, Can Kesmir, Dmitry M. Chudakov, Fabio Luciani, Mikhail Shugay

Nucleic Acids Res., 2020

Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences.

Erand Smakaj, Lmar Babrak, Mats Ohlin, Mikhail Shugay, Bryan S. Briney, Deniz Tosoni, Christopher Galli, Vendi Grobelsek, Igor D'Angelo, Branden J. Olson, Sai T. Reddy, Victor Greiff, Johannes Trück, Susanna Marquez, William D. Lees, Enkelejda Miho

Bioinform., 2020

2018

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity.

Mikhail Shugay, Dmitriy V. Bagaev, Ivan V. Zvyagin, Renske M. A. Vroomans, Jeremy Chase Crawford, Garry Dolton, Ekaterina Komech, Anastasiya L. Sycheva, Anna E. Koneva, Evgeniy S. Egorov, Alexey V. Eliseev, Ewald van Dyk, Pradyot Dash, Meriem Attaf, Cristina Rius, Kristin Ladell, James E. McLaren, Katherine K. Matthews, E. Bridie Clemens, Daniel C. Douek, Fabio Luciani, Debbie van Baarle, Katherine Kedzierska, Can Kesmir, Paul G. Thomas, David A. Price, Andrew K. Sewell, Dmitry M. Chudakov

Nucleic Acids Res., 2018

2017

MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.

Mikhail Shugay, Andrew R. Zaretsky, Dmitriy A. Shagin, Irina A. Shagina, Ivan A. Volchenkov, Andrew A. Shelenkov, Mikhail Y. Lebedin, Dmitriy V. Bagaev, Sergey A. Lukyanov, Dmitry M. Chudakov

PLoS Comput. Biol., 2017

2015

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.

Mikhail Shugay, Dmitriy V. Bagaev, Maria A. Turchaninova, Dmitriy A. Bolotin, Olga V. Britanova, Ekaterina V. Putintseva, Mikhail V. Pogorelyy, Vadim I. Nazarov, Ivan V. Zvyagin, Vitalina I. Kirgizova, Kirill I. Kirgizov, Elena V. Skorobogatova, Dmitry M. Chudakov

PLoS Comput. Biol., 2015

tcR: an R package for T cell receptor repertoire advanced data analysis.

Vadim Nazarov, Mikhail Pogorelyy, Ekaterina Komech, Ivan Zvyagin, Dmitry Bolotin, Mikhail Shugay, Dmitry Chudakov, Yuri B. Lebedev, Ilgar Z. Mamedov

BMC Bioinform., 2015

2013

Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions.

Mikhail Shugay, Iñigo Ortiz de Mendíbil, José L. Vizmanos, Francisco J. Novo

Bioinform., 2013

2012

Genomic Hallmarks of Genes Involved in Chromosomal Translocations in Hematological Cancer.

Mikhail Shugay, Iñigo Ortiz de Mendíbil, José L. Vizmanos, Francisco J. Novo

PLoS Comput. Biol., 2012