Sai T. Reddy

According to our database, Sai T. Reddy authored at least 8 papers between 2017 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

PLMFit: benchmarking transfer learning with protein language models for protein engineering.

Thomas Bikias, Evangelos Stamkopoulos, Sai T. Reddy

Briefings Bioinform., July, 2025

Delineating inter- and intra-antibody repertoire evolution with AntibodyForests.

Daphne van Ginneken, Valentijn Tromp, Lucas Stalder, Tudor-Stefan Cotet, Sophie Bakker, Anamay Samant, Sai T. Reddy, Alexander Yermanos

Bioinform., 2025

Protein language model pseudolikelihoods capture features of <i>in vivo</i> B cell selection and evolution.

Daphne van Ginneken, Anamay Samant, Karlis Daga-Krumins, Wiona Glänzer, Andreas Agrafiotis, Evgenios Kladis, Sai T. Reddy, Alexander Yermanos

Briefings Bioinform., 2025

2024

TCR clustering by contrastive learning on antigen specificity.

Margarita Pertseva, Oceane Follonier, Daniele Scarcella, Sai T. Reddy

Briefings Bioinform., September, 2024

2023

ePlatypus: an ecosystem for computational analysis of immunogenomics data.

Tudor-Stefan Cotet, Andreas Agrafiotis, Victor Kreiner, Raphael Kuhn, Danielle Shlesinger, Marcos Manero-Carranza, Keywan Khodaverdi, Evgenios Kladis, Aurora Desideri Perea, Dylan Maassen-Veeters, Wiona Glänzer, Solène Massery, Lorenzo Guerci, Kai-Lin Hong, Jiami Han, Kostas Stiklioraitis, Vittoria Martinolli D'arcy, Raphael Dizerens, Samuel Kilchenmann, Lucas Stalder, Leon Nissen, Basil Vogelsanger, Stine Anzböck, Daria Laslo, Sophie Bakker, Melinda Kondorosy, Marco Venerito, Alejandro Sanz García, Isabelle Feller, Annette Oxenius, Sai T. Reddy, Alexander Yermanos

Bioinform., September, 2023

2020

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking.

Cédric R. Weber, Rahmad Akbar, Alexander Yermanos, Milena Pavlovic, Igor Snapkov, Geir Kjetil Sandve, Sai T. Reddy, Victor Greiff

Bioinform., 2020

Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences.

Erand Smakaj, Lmar Babrak, Mats Ohlin, Mikhail Shugay, Bryan S. Briney, Deniz Tosoni, Christopher Galli, Vendi Grobelsek, Igor D'Angelo, Branden J. Olson, Sai T. Reddy, Victor Greiff, Johannes Trück, Susanna Marquez, William D. Lees, Enkelejda Miho

Bioinform., 2020

2017

Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim).

Alexander Yermanos, Victor Greiff, Nike Julia Krautler, Ulrike Menzel, Andreas Dounas, Enkelejda Miho, Annette Oxenius, Tanja Stadler, Sai T. Reddy

Bioinform., 2017