Paul G. Thomas

According to our database, Paul G. Thomas authored at least 6 papers between 2017 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

TCR2HLA: Calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes.

Koshlan Mayer-Blackwell, Anastasia A. Minervina, Mikhail Pogorelyy, Puneet Rawat, Melanie R. Shapiro, Leeana D. Peters, Emily S. Ford, Amanda Posgai, Kasi Vegesana, Samuel Minot, David M. Koelle, Victor Greiff, Philip Bradley, Todd M. Brusko, Paul G. Thomas, Andrew Fiore-Gartland

PLoS Comput. Biol., 2026

2025

Learning predictive signatures of HLA type from T-cell repertoires.

María Ruiz Ortega, Mikhail V. Pogorelyy, Anastasia A. Minervina, Paul G. Thomas, Thierry Mora, Aleksandra M. Walczak

PLoS Comput. Biol., 2025

Unbiased and error-detecting combinatorial pooling experiments with balanced constant-weight Gray codes for consecutive positives detection.

Guanchen He, Vasilisa A. Kovaleva, Carl Barton, Paul G. Thomas, Mikhail V. Pogorelyy, Hannah V. Meyer, Qin Huang

Bioinform., 2025

2022

Comparing T cell receptor repertoires using optimal transport.

Branden J. Olson, Stefan A. Schattgen, Paul G. Thomas, Philip Bradley, Frederick A. Matsen IV

PLoS Comput. Biol., December, 2022

2018

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity.

Mikhail Shugay, Dmitriy V. Bagaev, Ivan V. Zvyagin, Renske M. A. Vroomans, Jeremy Chase Crawford, Garry Dolton, Ekaterina Komech, Anastasiya L. Sycheva, Anna E. Koneva, Evgeniy S. Egorov, Alexey V. Eliseev, Ewald van Dyk, Pradyot Dash, Meriem Attaf, Cristina Rius, Kristin Ladell, James E. McLaren, Katherine K. Matthews, E. Bridie Clemens, Daniel C. Douek, Fabio Luciani, Debbie van Baarle, Katherine Kedzierska, Can Kesmir, Paul G. Thomas, David A. Price, Andrew K. Sewell, Dmitry M. Chudakov

Nucleic Acids Res., 2018

2017

Identifying T Cell Receptors from High-Throughput Sequencing: Dealing with Promiscuity in TCRα and TCRβ Pairing.

Edward S. Lee, Paul G. Thomas, Jeff E. Mold, Andrew J. Yates

PLoS Comput. Biol., 2017