Naoki Nariai

According to our database, Naoki Nariai authored at least 15 papers between 2004 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

A crowdsourced set of curated structural variants for the human genome.

Lesley M. Chapman, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M. Watson, Christos Proukakis, Wayne E. Clarke, Naoki Nariai, Eric T. Dawson, Garan Jones, Daniel J. Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza E. Ahmed, Graeme Smith, Saadlee Shehreen, Aaron M. Wenger, Marc Salit, Justin M. Zook

PLoS Comput. Biol., 2020

2017

Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data.

William W. Greenwald, He Li, Erin N. Smith, Paola Benaglio, Naoki Nariai, Kelly A. Frazer

BMC Bioinform., 2017

2016

A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes.

Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yosuke Kawai, Masao Nagasaki

BMC Genom., 2016

2015

HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data.

Naoki Nariai, Kaname Kojima, Sakae Saito, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Jun Yasuda, Masao Nagasaki

BMC Genom., 2015

Estimating copy numbers of alleles from population-scale high-throughput sequencing data.

Takahiro Mimori, Naoki Nariai, Kaname Kojima, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Masao Nagasaki

BMC Bioinform., 2015

2014

SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints.

Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya, Masao Nagasaki

Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads.

Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki

Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

2013

iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.

Takahiro Mimori, Naoki Nariai, Kaname Kojima, Mamoru Takahashi, Akira Ono, Yukuto Sato, Yumi Yamaguchi-Kabata, Masao Nagasaki

BMC Syst. Biol., 2013

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.

Naoki Nariai, Osamu Hirose, Kaname Kojima, Masao Nagasaki

Bioinform., 2013

A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.

Kaname Kojima, Naoki Nariai, Takahiro Mimori, Mamoru Takahashi, Yumi Yamaguchi-Kabata, Yukuto Sato, Masao Nagasaki

Bioinform., 2013

2008

Integration of relational and hierarchical network information for protein function prediction.

Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric D. Kolaczyk

BMC Bioinform., 2008

Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction.

Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, David Gold, Eric D. Kolaczyk

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2005

Estimating Gene Networks from Expression Data and Binding Location Data via Boolean Networks.

Osamu Hirose, Naoki Nariai, Yoshinori Tamada, Hideo Bannai, Seiya Imoto, Satoru Miyano

Proceedings of the Computational Science and Its Applications, 2005

Estimating gene regulatory networks and protein-protein interactions of <i>Saccharomyces cerevisiae</i> from multiple genome-wide data.

Naoki Nariai, Yoshinori Tamada, Seiya Imoto, Satoru Miyano

Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2004

Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks.

Naoki Nariai, SunYong Kim, Seiya Imoto, Satoru Miyano

Proceedings of the Biocomputing 2004, 2004