Simon Kasif

According to our database1, Simon Kasif authored at least 57 papers between 1982 and 2016.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of two.

Timeline

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Bibliography

2016
COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps.
Nucleic Acids Res., 2016

2011
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Nucleic Acids Res., 2011

2010
Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle.
Artif. Intell. Medicine, 2010

2009
Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance.
Bioinform., 2009

Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering.
Bioinform., 2009

2008
Formula dissection: A parallel algorithm for constraint satisfaction.
Comput. Math. Appl., 2008

Integration of relational and hierarchical network information for protein function prediction.
BMC Bioinform., 2008

Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007
Hierarchical tree snipping: clustering guided by prior knowledge.
Bioinform., 2007

2006
Multi-Node Graphs: A Framework for Multiplexed Biological Assays.
J. Comput. Biol., 2006

2005
GEMS: a web server for biclustering analysis of expression data.
Nucleic Acids Res., 2005

MuPlex: multi-objective multiplex PCR assay design.
Nucleic Acids Res., 2005

Phylogenetic detection of conserved gene clusters in microbial genomes.
BMC Bioinform., 2005

Less is more: towards an optimal universal description of protein folds.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2004
Learning a Hidden Matching.
SIAM J. Comput., 2004

topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association.
Nucleic Acids Res., 2004

2003
Identification of functional links between genes using phylogenetic profiles.
Bioinform., 2003

RankGene: identification of diagnostic genes based on expression data.
Bioinform., 2003

Extracting Conserved Gene Expression Motifs from Gene Expression Data.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Predicting protein function from protein/protein interaction data: a probabilistic approach.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

2002
A Bayesian framework for combining gene predictions.
Bioinform., 2002

2001
An optimal procedure for gap closing in whole genome shotgun sequencing.
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

2000
Modeling splice sites with Bayes networks.
Bioinform., 2000

1998
A Probabilistic Framework for Memory-Based Reasoning.
Artif. Intell., 1998

1996
Learning nested concept classes with limited storage.
J. Exp. Theor. Artif. Intell., 1996

Logarithmic-Time Updates and Queries in Probabilistic Networks.
J. Artif. Intell. Res., 1996

Towards a Constraint-Based Engineering Framework for Algorithm Design and Application.
ACM Comput. Surv., 1996

Local Induction of Decision Trees: Towards Interactive Data Mining.
Proceedings of the Second International Conference on Knowledge Discovery and Data Mining (KDD-96), 1996

1995
Best-Case Results for Nearest-Neighbor Learning.
IEEE Trans. Pattern Anal. Mach. Intell., 1995

On Reasoning From Data.
ACM Comput. Surv., 1995

Term Matching on a Mesh-Connected Array of Processors.
Ann. Math. Artif. Intell., 1995

Efficient Algorithms for Finding Multi-way Splits for Decision Trees.
Proceedings of the Machine Learning, 1995

1994
A System for Induction of Oblique Decision Trees.
J. Artif. Intell. Res., 1994

Local Consistency in Parallel Constraint Satisfaction Networks.
Artif. Intell., 1994

Towards a Better Understanding of Memory-based Reasoning Systems.
Proceedings of the Machine Learning, 1994

Exploiting Algebraic Structure in Parallel State Space Search.
Proceedings of the 12th National Conference on Artificial Intelligence, Seattle, WA, USA, July 31, 1994

1993
The Complexity of Finding Minimal Voronoi Covers with Applications to Machine Learning.
Comput. Geom., 1993

Some Results on the Computational Complexity of Symmetric Connectionist Networks.
Ann. Math. Artif. Intell., 1993

Protein Secondary-Structure Modeling with Probabilistic Networks.
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993

Induction of Oblique Decision Trees.
Proceedings of the 13th International Joint Conference on Artificial Intelligence. Chambéry, France, August 28, 1993

OC1: A Randomized Induction of Oblique Decision Trees.
Proceedings of the 11th National Conference on Artificial Intelligence. Washington, 1993

Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract).
Proceedings of the 11th National Conference on Artificial Intelligence. Washington, 1993

1992
Efficient Parallel Term Matching and Anti-Unification.
J. Autom. Reason., 1992

Improved Decision-Making in Game Trees: Recovering from Pathology.
Proceedings of the 10th National Conference on Artificial Intelligence, 1992

1991
Learning with a Helpful Teacher.
Proceedings of the 12th International Joint Conference on Artificial Intelligence. Sydney, 1991

1990
On the Parallel Complexity of Discrete Relaxation in Constraint Satisfaction Networks.
Artif. Intell., 1990

1989
Some Results on the Complexity of Exploiting Data Dependency in Parallel Logic Programs.
J. Log. Program., 1989

Parallel Solutions to Constraint Satisfaction Problems.
Proceedings of the 1st International Conference on Principles of Knowledge Representation and Reasoning (KR'89). Toronto, 1989

1986
Control and data driven execution of logic programs: A comparison.
Int. J. Parallel Program., 1986

On the Parallel Complexity of Some Constraint Satisfaction Problems.
Proceedings of the 5th National Conference on Artificial Intelligence. Philadelphia, 1986

1985
The Intelligent Channel: A Scheme for Result Sharing in Logic Programs.
Proceedings of the 9th International Joint Conference on Artificial Intelligence. Los Angeles, 1985

1983
Pyramid linking is a special case of ISODATA.
IEEE Trans. Syst. Man Cybern., 1983

A hough transform technique for subgraph isomorphism.
Pattern Recognit. Lett., 1983

PRISM - A Parallel Inference System for Problem Solving.
Proceedings of the Logic Programming Workshop '83, Praia da Falésia, Algarve, Portugal, 26 June, 1983

1982
Logic Programming on ZMOB: A Highly Parallel Machine.
Proceedings of the International Conference on Parallel Processing, 1982

Logic Programming: A Parallel Approach.
Proceedings of the First International Logic Programming Conference, 1982


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