Narayan Ganesan

According to our database, Narayan Ganesan authored at least 16 papers between 2005 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

CUDAMPF++: A Proactive Resource Exhaustion Scheme for Accelerating Homologous Sequence Search on CUDA-Enabled GPU.

Hanyu Jiang, Narayan Ganesan, Yu-Dong Yao

IEEE Trans. Parallel Distributed Syst., 2018

2016

Process Simulation of Complex Biological Pathways in Physical Reactive Space and Reformulated for Massively Parallel Computing Platforms.

Narayan Ganesan, Jie Li, Vishakha Sharma, Hanyu Jiang, Adriana B. Compagnoni

IEEE ACM Trans. Comput. Biol. Bioinform., 2016

CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU.

Hanyu Jiang, Narayan Ganesan

BMC Bioinform., 2016

Computational Framework for in-Silico Study of Virtual Cell Biology via Process Simulation and Multiscale Modeling.

Hanyu Jiang, Morisa Manzella, Luka Djapic, Narayan Ganesan

Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015

Fine-Grained Acceleration of HMMER 3.0 via Architecture-Aware Optimization on Massively Parallel Processors.

Hanyu Jiang, Narayan Ganesan

Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

2014

Process Simulation of Complex Biochemical Pathways in Explicit 3D Space Enabled by Heterogeneous Computing Platform.

Jie Li, Amin Salighehdar, Narayan Ganesan

Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Simulation of Complex Biochemical Pathways in 3D Process Space via Heterogeneous Computing Platform: Preliminary Results.

Jie Li, Amin Salighehdar, Narayan Ganesan

Proceedings of the Reconfigurable Computing: Architectures, Tools, and Applications, 2014

2013

GPU-Enabled Macromolecular Simulation: Challenges and Opportunities.

Michela Taufer, Narayan Ganesan, Sandeep Patel

Comput. Sci. Eng., 2013

Achieving decoherence suppression in open quantum systems by utilizing the model of environmental interactions.

Narayan Ganesan, Tzyh Jong Tarn

Proceedings of the American Control Conference, 2013

2012

Simulation and study of large-scale bacteria-materials interactions via BioScape enabled by GPUs.

Jie Li, Vishakha Sharma, Narayan Ganesan, Adriana B. Compagnoni

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs).

Narayan Ganesan, Brad A. Bauer, Timothy R. Lucas, Sandeep Patel, Michela Taufer

J. Comput. Chem., 2011

FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME.

Narayan Ganesan, Michela Taufer, Brad A. Bauer, Sandeep Patel

Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

2010

Accelerating HMMER on GPUs by implementing hybrid data and task parallelism.

Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Sorting on architecturally diverse computer systems.

Roger D. Chamberlain, Narayan Ganesan

Proceedings of the Third International Workshop on High-Performance Reconfigurable Computing Technology and Applications, 2009

2007

Quantum internal model principle and enhanced disturbance decoupling.

Narayan Ganesan, Tzyh Jong Tarn

Proceedings of the 46th IEEE Conference on Decision and Control, 2007

2005

Control of decoherence in open quantum systems using feedback.

Narayan Ganesan, Tzyh Jong Tarn

Proceedings of the 44th IEEE IEEE Conference on Decision and Control and 8th European Control Conference Control, 2005