Natalio Krasnogor

According to our database1, Natalio Krasnogor authored at least 126 papers between 1997 and 2019.

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Bibliography

2019
AREA: Adaptive Reference-set Based Evolutionary Algorithm for Multiobjective Optimisation.
CoRR, 2019

A Scalable Test Suite for Continuous Dynamic Multiobjective Optimisation.
CoRR, 2019

Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations.
Bioinformatics, 2019

2018
Automatic selection of verification tools for efficient analysis of biochemical models.
Bioinformatics, 2018

Less detectable environmental changes in dynamic multiobjective optimisation.
Proceedings of the Genetic and Evolutionary Computation Conference, 2018

An Empirical Study of Dynamic Triobjective Optimisation Problems.
Proceedings of the 2018 IEEE Congress on Evolutionary Computation, 2018

Strain Design as Multiobjective Network Interdiction Problem: A Preliminary Approach.
Proceedings of the Advances in Artificial Intelligence, 2018

2017
Optimizing nucleic acid sequences for a molecular data recorder.
Proceedings of the Genetic and Evolutionary Computation Conference, 2017

2016
Functional networks inference from rule-based machine learning models.
BioData Mining, 2016

In Vitro Implementation of a Stack Data Structure Based on DNA Strand Displacement.
Proceedings of the Unconventional Computation and Natural Computation, 2016

2015
Algorithms and models for complex natural systems.
Natural Computing, 2015

Complexity Measurement Based on Information Theory and Kolmogorov Complexity.
Artificial Life, 2015

2014
Blind optimisation problem instance classification via enhanced universal similarity metric.
Memetic Computing, 2014

Formalizing Modularization and Data Hiding in Synthetic Biology.
JETC, 2014

Conventional Verification for Unconventional Computing: a Genetic XOR Gate Example.
Fundam. Inform., 2014

Photochromic molecular implementations of universal computation.
Biosystems, 2014

JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks.
Bioinformatics, 2014

Hard Data Analytics Problems Make for Better Data Analysis Algorithms: Bioinformatics as an Example.
Big Data, 2014

Modelling and Stochastic Simulation of Synthetic Biological Boolean Gates.
Proceedings of the 2014 IEEE International Conference on High Performance Computing and Communications, 2014

Chemical Production and Molecular Computing in Addressable Reaction Compartments.
Proceedings of the Language, Life, Limits - 10th Conference on Computability in Europe, 2014

2013
GAssist vs. BioHEL: critical assessment of two paradigms of genetics-based machine learning.
Soft Comput., 2013

Matching island topologies to problem structure in parallel evolutionary algorithms.
Soft Comput., 2013

A genotype-phenotype-fitness assessment protocol for evolutionary self-assembly Wang tiles design.
Memetic Computing, 2013

Editorial.
Memetic Computing, 2013

An Intelligent Multi-Restart Memetic Algorithm for Box Constrained Global Optimisation.
Evolutionary Computation, 2013

Exploring Programmable Self-Assembly in Non-DNA based Molecular Computing.
CoRR, 2013

2012
Memetic Algorithms.
Proceedings of the Handbook of Natural Computing, 2012

Analysing BioHEL using challenging boolean functions.
Evolutionary Intelligence, 2012

Implementing conventional logic unconventionally: Photochromic molecular populations as registers and logic gates.
Biosystems, 2012

EnrichNet: network-based gene set enrichment analysis.
Bioinformatics, 2012

Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features.
Bioinformatics, 2012

Post-processing operators for decision lists.
Proceedings of the Genetic and Evolutionary Computation Conference, 2012

2011
Protein Models Comparator
CoRR, 2011

The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology.
Bioinformatics, 2011

Genotype-Fitness Correlation Analysis for Evolutionary Design of Self-assembly Wang Tiles.
Proceedings of the Nature Inspired Cooperative Strategies for Optimization, 2011

(Computational) synthetic biology.
Proceedings of the 13th Annual Genetic and Evolutionary Computation Conference, 2011

Modelling the initialisation stage of the ALKR representation for discrete domains and GABIL encoding.
Proceedings of the 13th Annual Genetic and Evolutionary Computation Conference, 2011

Effective calibration of artificial gene regulatory networks.
Proceedings of the Advances in Artificial Life: 20th Anniversary Edition, 2011

Darwin's magic: Evolutionary computation in nanoscience, bioinformatics and systems biology.
Proceedings of the IEEE Congress on Evolutionary Computation, 2011

2010
Special issue on Nature Inspired Cooperative Strategies for Optimisation (NICSO).
Natural Computing, 2010

GP challenge: evolving energy function for protein structure prediction.
Genetic Programming and Evolvable Machines, 2010

A learning classifier system with mutual-information-based fitness.
Evolutionary Intelligence, 2010

Towards the Design of Heuristics by Means of Self-Assembly
Proceedings of the Proceedings Sixth Workshop on Developments in Computational Models: Causality, 2010

Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study.
BMC Systems Biology, 2010

Extending pathways and processes using molecular interaction networks to analyse cancer genome data.
BMC Bioinformatics, 2010

TopoGSA: network topological gene set analysis.
Bioinformatics, 2010

Discovering Beneficial Cooperative Structures for the Automated Construction of Heuristics.
Proceedings of the Nature Inspired Cooperative Strategies for Optimization, 2010

Evolutionary symbolic discovery for bioinformatics, systems and synthetic biology.
Proceedings of the Genetic and Evolutionary Computation Conference, 2010

P system model optimisation by means of evolutionary based search algorithms.
Proceedings of the Genetic and Evolutionary Computation Conference, 2010

Speeding up the evaluation of evolutionary learning systems using GPGPUs.
Proceedings of the Genetic and Evolutionary Computation Conference, 2010

Learning Pathway-based Decision Rules to Classify Microarray Cancer Samples.
Proceedings of the German Conference on Bioinformatics 2010, 2010

On the Scalability of Multi-Criteria Protein Structure Comparison in the Grid.
Proceedings of the Euro-Par 2010 Parallel Processing Workshops, 2010

Grammatical rules for the automated construction of heuristics.
Proceedings of the IEEE Congress on Evolutionary Computation, 2010

2009
Multiple-Test Analysis of Sequences of SNPs for Determining Susceptibility to Pre-eclampsia.
Proceedings of the Computational Intelligence and Bioengineering, 2009

Prediction of topological contacts in proteins using learning classifier systems.
Soft Comput., 2009

P-systems and X-machines.
Natural Computing, 2009

Editorial to the first issue.
Memetic Computing, 2009

Improving the scalability of rule-based evolutionary learning.
Memetic Computing, 2009

Nature-inspired cooperative strategies for optimization.
Int. J. Intell. Syst., 2009

Automated self-assembly programming paradigm: The impact of network topology.
Int. J. Intell. Syst., 2009

Modular Assembly of Cell Systems Biology Models Using P Systems.
Int. J. Found. Comput. Sci., 2009

Adaptive Cellular Memetic Algorithms.
Evolutionary Computation, 2009

Performance and Efficiency of Memetic Pittsburgh Learning Classifier Systems.
Evolutionary Computation, 2009

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization.
BMC Bioinformatics, 2009

Automated Alphabet Reduction for Protein Datasets.
BMC Bioinformatics, 2009

Liposome logic.
Proceedings of the Genetic and Evolutionary Computation Conference, 2009

Synthetic biology: modelling and optimisation.
Proceedings of the Genetic and Evolutionary Computation Conference, 2009

A mixed discrete-continuous attribute list representation for large scale classification domains.
Proceedings of the Genetic and Evolutionary Computation Conference, 2009

An Approach to the Engineering of Cellular Models Based on P Systems.
Proceedings of the Mathematical Theory and Computational Practice, 2009

A framework for the application of decision trees to the analysis of SNPs data.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

Evolutionary design of the energy function for protein structure prediction.
Proceedings of the IEEE Congress on Evolutionary Computation, 2009

On the storage, management and analysis of (multi) similarity for large scale protein structure datasets in the grid.
Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

2008
Data Mining in Proteomics with Learning Classifier Systems.
Proceedings of the Learning Classifier Systems in Data Mining, 2008

Memetic Algorithms: The Polynomial Local Search Complexity Theory Perspective.
J. Math. Model. Algorithms, 2008

P systems applications to systems biology.
Biosystems, 2008

Prediction of recursive convex hull class assignments for protein residues.
Bioinformatics, 2008

A Multiscale Modeling Framework Based on P Systems.
Proceedings of the Membrane Computing - 9th International Workshop, 2008

Performance Evaluation of Protein Structure Comparison Algorithms Under Integrated Resource Management Environment for MPI Jobs.
Proceedings of the IEEE International Symposium on Parallel and Distributed Processing with Applications, 2008

Learning classifier systems for optimisation problems: a case study on fractal travelling salesman problem.
Proceedings of the Genetic and Evolutionary Computation Conference, 2008

A multi-scaled approach to artificial life simulation with P systems and dissipative particle dynamics.
Proceedings of the Genetic and Evolutionary Computation Conference, 2008

Structure and parameter estimation for cell systems biology models.
Proceedings of the Genetic and Evolutionary Computation Conference, 2008

Fast rule representation for continuous attributes in genetics-based machine learning.
Proceedings of the Genetic and Evolutionary Computation Conference, 2008

2007
Memetic Algorithm for the Generalized Asymmetric Traveling Salesman Problem.
Proceedings of the Nature Inspired Cooperative Strategies for Optimization (NICSO 2007), 2007

Special Issue on Memetic Algorithms.
IEEE Trans. Systems, Man, and Cybernetics, Part B, 2007

Quorum sensing P systems.
Theor. Comput. Sci., 2007

An Evolutionary Methodology for the Automated Design of Cellular Automaton-based Complex Systems.
J. Cellular Automata, 2007

ProCKSI: a decision support system for Protein (Structure) Comparison, Knowledge, Similarity and Information.
BMC Bioinformatics, 2007

Empirical Evaluation of Ensemble Techniques for a Pittsburgh Learning Classifier System.
Proceedings of the Learning Classifier Systems, 2007

Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview.
Proceedings of the Frontiers of High Performance Computing and Networking ISPA 2007 Workshops, 2007

Immune Algorithm Versus Differential Evolution: A Comparative Case Study Using High Dimensional Function Optimization.
Proceedings of the Adaptive and Natural Computing Algorithms, 8th International Conference, 2007

Automated alphabet reduction method with evolutionary algorithms for protein structure prediction.
Proceedings of the Genetic and Evolutionary Computation Conference, 2007

Evolving tiles for automated self-assembly design.
Proceedings of the IEEE Congress on Evolutionary Computation, 2007

A study on the design issues of Memetic Algorithm.
Proceedings of the IEEE Congress on Evolutionary Computation, 2007

2006
Turing Machines with Cells on the Tape.
Proceedings of the Nanotechnology: Science and Computation, 2006

Towards a P Systems Pseudomonas Quorum Sensing Model.
Proceedings of the Membrane Computing, 7th International Workshop, 2006

Coordination number prediction using learning classifier systems: performance and interpretability.
Proceedings of the Genetic and Evolutionary Computation Conference, 2006

Smart crossover operator with multiple parents for a Pittsburgh learning classifier system.
Proceedings of the Genetic and Evolutionary Computation Conference, 2006

From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems.
Proceedings of the Applications of Evolutionary Computing, 2006

2005
A tutorial for competent memetic algorithms: model, taxonomy, and design issues.
IEEE Trans. Evolutionary Computation, 2005

A fuzzy sets based generalization of contact maps for the overlap of protein structures.
Fuzzy Sets and Systems, 2005

Editorial.
Fuzzy Sets and Systems, 2005

An Appealing Computational Mechanism Drawn from Bacterial Quorum Sensing.
Bulletin of the EATCS, 2005

On Self-assembly in Population P Systems.
Proceedings of the Unconventional Computation, 4th International Conference, 2005

On P Systems with Bounded Parallelism.
Proceedings of the Seventh International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC 2005), 2005

On P Systems as a Modelling Tool for Biological Systems.
Proceedings of the Membrane Computing, 6th International Workshop, 2005

Protein Structure Comparison through Fuzzy Contact Maps and the Universal Similarity Metric.
Proceedings of the Joint 4th Conference of the European Society for Fuzzy Logic and Technology and the 11th Rencontres Francophones sur la Logique Floue et ses Applications, 2005

Selecting protein fuzzy contact maps through information and structure measures.
Proceedings of the Joint 4th Conference of the European Society for Fuzzy Logic and Technology and the 11th Rencontres Francophones sur la Logique Floue et ses Applications, 2005

The Tree-String Problem: An Artificial Domain for Structure and Content Search.
Proceedings of the Genetic Programming, 8th European Conference, 2005

Evolving L-Systems to Capture Protein Structure Native Conformations.
Proceedings of the Genetic Programming, 8th European Conference, 2005

An Environment Aware P-System Model of Quorum Sensing.
Proceedings of the New Computational Paradigms, 2005

Membrane Computing - Current Results and Future Problems.
Proceedings of the New Computational Paradigms, 2005

Automated tile design for self-assembly conformations.
Proceedings of the IEEE Congress on Evolutionary Computation, 2005

On improving genetic programming for symbolic regression.
Proceedings of the IEEE Congress on Evolutionary Computation, 2005

Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding.
Proceedings of the Artificial Evolution, 2005

A Critical View of the Evolutionary Design of Self-assembling Systems.
Proceedings of the Artificial Evolution, 2005

2004
A Study on the use of "self-generation" in memetic algorithms.
Natural Computing, 2004

Self Generating Metaheuristics in Bioinformatics: The Proteins Structure Comparison Case.
Genetic Programming and Evolvable Machines, 2004

Real-Coded Memetic Algorithms with Crossover Hill-Climbing.
Evolutionary Computation, 2004

Measuring the similarity of protein structures by means of the universal similarity metric.
Bioinformatics, 2004

2002
Studies on the theory and design space of memetic algorithms.
PhD thesis, 2002

Multimeme Algorithms for Protein Structure Prediction.
Proceedings of the Parallel Problem Solving from Nature, 2002

Advanced Population Diversity Measures in Genetic Programming.
Proceedings of the Parallel Problem Solving from Nature, 2002

Alignment Of Protein Structures With A Memetic Evolutionary Algorithm.
Proceedings of the GECCO 2002: Proceedings of the Genetic and Evolutionary Computation Conference, 2002

2000
A Memetic Algorithm With Self-Adaptive Local Search: TSP as a case study.
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO '00), 2000

1997
Modelling String Folding with G2L Grammars.
Proceedings of the 1997 ACM SIGPLAN International Conference on Functional Programming (ICFP '97), 1997

Protien Folding meets Functional Programming.
Proceedings of the 1997 ACM SIGPLAN International Conference on Functional Programming (ICFP '97), 1997


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