Dario Pescini

According to our database1, Dario Pescini authored at least 35 papers between 2005 and 2018.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2018
Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes.
BMC Bioinformatics, 2018

2017
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect.
PLoS Computational Biology, 2017

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis.
Bioinformatics, 2017

2016
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models.
Computational Biology and Chemistry, 2016

Constraint-Based Modeling and Simulation of Cell Populations.
Proceedings of the Advances in Artificial Life, Evolutionary Computation, and Systems Chemistry, 2016

Linking Alterations in Metabolic Fluxes with Shifts in Metabolite Levels by Means of Kinetic Modeling.
Proceedings of the Advances in Artificial Life, Evolutionary Computation, and Systems Chemistry, 2016

Constraining Mechanism Based Simulations to Identify Ensembles of Parametrizations to Characterize Metabolic Features.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2016

2014
An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes.
Natural Computing, 2014

2013
An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis.
Proceedings of the Proceedings Wivace 2013, 2013

GPU-powered Simulation Methodologies for Biological Systems.
Proceedings of the Proceedings Wivace 2013, 2013

In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae.
BMC Systems Biology, 2013

cupSODA: A CUDA-Powered Simulator of Mass-Action Kinetics.
Proceedings of the Parallel Computing Technologies - 12th International Conference, 2013

Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization.
Proceedings of the IEEE Congress on Evolutionary Computation, 2013

2012
The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae.
EURASIP J. Bioinformatics and Systems Biology, 2012

Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs.
Proceedings of the Genetic and Evolutionary Computation Conference, 2012

A GPU-Based Multi-swarm PSO Method for Parameter Estimation in Stochastic Biological Systems Exploiting Discrete-Time Target Series.
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2012

2011
Modeling Diffusion in a Signal Transduction Pathway: the Use of Virtual Volumes in P Systems.
Int. J. Found. Comput. Sci., 2011

Grid Computing for Sensitivity Analysis of Stochastic Biological Models.
Proceedings of the Parallel Computing Technologies - 11th International Conference, 2011

2010
Computing with energy and chemical reactions.
Natural Computing, 2010

An Analysis on the Influence of Network Topologies on Local and Global Dynamics of Metapopulation Systems
Proceedings of the Proceedings First Workshop on Applications of Membrane computing, 2010

Modelling Spatial Heterogeneity and Macromolecular Crowding with Membrane Systems.
Proceedings of the Membrane Computing, 2010

BioSimWare: A Software for the Modeling, Simulation and Analysis of Biological Systems.
Proceedings of the Membrane Computing, 2010

2009
(Tissue) P systems with cell polarity.
Mathematical Structures in Computer Science, 2009

A study on the combined interplay between stochastic fluctuations and the number of flagella in bacterial chemotaxis
Proceedings of the Proceedings Second International Workshop on Computational Models for Cell Processes, 2009

A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems.
Proceedings of the Membrane Computing, 10th International Workshop, 2009

A Comparison of Genetic Algorithms and Particle Swarm Optimization for Parameter Estimation in Stochastic Biochemical Systems.
Proceedings of the Evolutionary Computation, 2009

2008
Modelling metapopulations with stochastic membrane systems.
Biosystems, 2008

First Steps Towards a Wet Implementation for t-DPP.
Proceedings of the Membrane Computing - 9th International Workshop, 2008

2007
Cycles and communicating classes in membrane systems and molecular dynamics.
Theor. Comput. Sci., 2007

2006
Dynamical probabilistic P systems.
Int. J. Found. Comput. Sci., 2006

Towards Probabilistic Model Checking on P Systems Using PRISM.
Proceedings of the Membrane Computing, 7th International Workshop, 2006

Tau Leaping Stochastic Simulation Method in P Systems.
Proceedings of the Membrane Computing, 7th International Workshop, 2006

Towards a P Systems Pseudomonas Quorum Sensing Model.
Proceedings of the Membrane Computing, 7th International Workshop, 2006

2005
Investigating Local Evolutions in Dynamical Probabilistic P Systems.
Proceedings of the Seventh International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC 2005), 2005

Analysis and Simulation of Dynamics in Probabilistic P Systems.
Proceedings of the DNA Computing, 11th International Workshop on DNA Computing, 2005


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