Neri Niccolai

According to our database, Neri Niccolai authored at least 9 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

SADIC v2: A modern implementation of the Simple Atom Depth Index Calculator.

Sara Marziali, Giacomo Nunziati, Alessia Lucia Prete, Neri Niccolai, Monica Bianchini

SoftwareX, 2024

A Discrete Geometry Method for Atom Depth Computation in Complex Molecular Systems.

Sara Marziali, Giacomo Nunziati, Alessia Lucia Prete, Neri Niccolai, Sara Brunetti, Monica Bianchini

Proceedings of the Discrete Geometry and Mathematical Morphology, 2024

2022

Structural Bioinformatic Survey of Protein-Small Molecule Interfaces Delineates the Role of Glycine in Surface Pocket Formation.

Pietro Bongini, Neri Niccolai, Alfonso Trezza, Guido Mangiavacchi, Annalisa Santucci, Ottavia Spiga, Monica Bianchini, Simone Gardini

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

2021

Structural bioinformatics survey on disease-inducing missense mutations.

Pietro Bongini, Simone Gardini, Monica Bianchini, Ottavia Spiga, Neri Niccolai

J. Bioinform. Comput. Biol., 2021

2020

A deep attention network for predicting amino acid signals in the formation of α-helices.

Anna Visibelli, Pietro Bongini, Alberto Rossi, Neri Niccolai, Monica Bianchini

J. Bioinform. Comput. Biol., 2020

2019

Glycine-induced formation and druggability score prediction of protein surface pockets.

Pietro Bongini, Neri Niccolai, Monica Bianchini

J. Bioinform. Comput. Biol., 2019

2017

Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1, 2-dioxygenase mutants at the base of rare disease Alkaptonuria.

Andrea Bernini, Silvia Galderisi, Ottavia Spiga, Giulia Bernardini, Neri Niccolai, Fabrizio Manetti, Annalisa Santucci

Comput. Biol. Chem., 2017

2013

ProCoCoA: A quantitative approach for analyzing protein core composition.

Silvia Bottini, Andrea Bernini, Matteo De Chiara, Diego Garlaschelli, Ottavia Spiga, Marco Dioguardi, Elisa Vannuccini, Anna Tramontano, Neri Niccolai

Comput. Biol. Chem., 2013

2005

Three-dimensional computation of atom depth in complex molecular structures.

Daniele Varrazzo, Andrea Bernini, Ottavia Spiga, Arianna Ciutti, Stefano Chiellini, Vincenzo Venditti, Luisa Bracci, Neri Niccolai

Bioinform., 2005