Robert M. Dirks

According to our database, Robert M. Dirks authored at least 5 papers between 2003 and 2021.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2021

Anton 3: twenty microseconds of molecular dynamics simulation before lunch.

David E. Shaw, Peter J. Adams, Asaph Azaria, Joseph A. Bank, Brannon Batson, Alistair Bell, Michael Bergdorf, Jhanvi Bhatt, J. Adam Butts, Timothy Correia, Robert M. Dirks, Ron O. Dror, Michael P. Eastwood, Bruce Edwards, Amos Even, Peter Feldmann, Michael Fenn, Christopher H. Fenton, Anthony Forte, Joseph Gagliardo, Gennette Gill, Maria Gorlatova, Brian Greskamp, J. P. Grossman, Justin Gullingsrud, Anissa Harper, William Hasenplaugh, Mark Heily, Benjamin Colin Heshmat, Jeremy Hunt, Douglas J. Ierardi, Lev Iserovich, Bryan L. Jackson, Nick P. Johnson, Mollie M. Kirk, John L. Klepeis, Jeffrey S. Kuskin, Kenneth M. Mackenzie, Roy J. Mader, Richard McGowen, Adam McLaughlin, Mark A. Moraes, Mohamed H. Nasr, Lawrence J. Nociolo, Lief O'Donnell, Andrew Parker, Jon L. Peticolas, Goran Pocina, Cristian Predescu, Terry Quan, John K. Salmon, Carl Schwink, Keun Sup Shim, Naseer Siddique, Jochen Spengler, Tamas Szalay, Raymond Tabladillo, Reinhard Tartler, Andrew G. Taube, Michael Theobald, Brian Towles, William Vick, Stanley C. Wang, Michael Wazlowski, Madeleine J. Weingarten, John M. Williams, Kevin A. Yuh

Proceedings of the International Conference for High Performance Computing, 2021

2011

NUPACK: Analysis and design of nucleic acid systems.

Joseph N. Zadeh, Conrad Steenberg, Justin S. Bois, Brian R. Wolfe, Marshall B. Pierce, Asif R. Khan, Robert M. Dirks, Niles A. Pierce

J. Comput. Chem., 2011

2007

Thermodynamic Analysis of Interacting Nucleic Acid Strands.

Robert M. Dirks, Justin S. Bois, Joseph M. Schaeffer, Erik Winfree, Niles A. Pierce

SIAM Rev., 2007

2004

An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots.

Robert M. Dirks, Niles A. Pierce

J. Comput. Chem., 2004

2003

A partition function algorithm for nucleic acid secondary structure including pseudoknots.

Robert M. Dirks, Niles A. Pierce

J. Comput. Chem., 2003