Oscar Días

According to our database, Oscar Días authored at least 16 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models.

Fernando Cruz, João Capela, Eugénio C. Ferreira, Miguel Rocha, Oscar Días

IEEE ACM Trans. Comput. Biol. Bioinform., 2024

2023

<i>TranSyT</i>, an innovative framework for identifying transport systems.

Emanuel Cunha, Davide Lagoa, José P. Faria, Filipe Liu, Christopher S. Henry, Oscar Días

Bioinform., August, 2023

The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber.

Emanuel Cunha, Miguel Silva, Inês Chaves, Hüseyin Demirci, Davide Lagoa, Diogo Lima, Miguel Rocha, Isabel Rocha, Oscar Días

PLoS Comput. Biol., 2023

2022

Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool.

Alexandre Oliveira, Emanuel Cunha, Fernando Cruz, João Capela, João Carlos Sequeira, Marta Sampaio, Cláudia Sampaio, Oscar Días

J. Integr. Bioinform., 2022

Exploring Xylella fastidiosa's Metabolic Traits Using a GSM Model of the Phytopathogenic Bacterium.

Alexandre Oliveira, Emanuel Cunha, Miguel Silva, Cristiana Faria, Oscar Días

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2022

2021

A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli.

Alexandre Oliveira, Joana Rodrigues, Eugénio Campos Ferreira, Lígia R. Rodrigues, Oscar Días

PLoS Comput. Biol., 2021

Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database.

Alexandre Oliveira, Emanuel Cunha, Fernando Cruz, João Capela, João Carlos Sequeira, Marta Sampaio, Oscar Días

Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2021

2020

Reconciliation of Regulatory Data: The Regulatory Networks of Escherichia coli and Bacillus subtilis.

Diogo Lima, Fernando Cruz, Miguel Rocha, Oscar Días

Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2020

Towards the Reconstruction of the Genome-Scale Metabolic Model of Lactobacillus acidophilus La-14.

Emanuel Cunha, Ahmad A. Zeidan, Oscar Días

Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2020

2019

SamPler - a novel method for selecting parameters for gene functional annotation routines.

Fernando Cruz, Davide Lagoa, João Mendes, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha, Oscar Días

BMC Bioinform., 2019

Predicting promoters in phage genomes using PhagePromoter.

Marta Sampaio, Miguel Rocha, Hugo Oliveira, Oscar Días

Bioinform., 2019

Predicting Promoters in Phage Genomes Using Machine Learning Models.

Marta Sampaio, Miguel Rocha, Hugo Oliveira, Oscar Días

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2019

Towards the Reconstruction of Integrated Genome-Scale Models of Metabolism and Gene Expression.

Fernando Cruz, Diogo Lima, José P. Faria, Miguel Rocha, Oscar Días

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2019

2017

Genome-Wide Semi-Automated Annotation of Transporter Systems.

Oscar Días, Daniel Gomes, Paulo Vilaça, João G. R. Cardoso, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

2014

Metagenomic Analysis of the Saliva Microbiome with Merlin.

Pedro Barbosa, Oscar Días, Joel P. Arrais, Miguel Rocha

Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

2008

Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis.

José P. Pinto, Oscar Días, Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha

Proceedings of the 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics, 2008