Paulo Vilaça

According to our database, Paulo Vilaça authored at least 16 papers between 2010 and 2018.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2018

Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z.

Bruno Pereira, Joana Miguel, Paulo Vilaça, Simão Soares, Isabel Rocha, Sónia Carneiro

BMC Syst. Biol., 2018

In Silico Predictions for Fucoxanthin Production by the Diatom Phaeodactylum Tricornutum.

Cláudia M. Bauer, Paulo Vilaça, Fernanda Ramlov, Eva Regina de Oliveira, Débora Cabral Nazário, Caroline Schmitz, Rafaela Gordo Corrêa, Miguel Rocha, Marcelo Maraschin

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

2017

Genome-Wide Semi-Automated Annotation of Transporter Systems.

Oscar Días, Daniel Gomes, Paulo Vilaça, João G. R. Cardoso, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

A Critical Evaluation of Automatic Atom Mapping Algorithms and Tools.

Nuno Osório, Paulo Vilaça, Miguel Rocha

Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

2015

Development and application of efficient pathway enumeration algorithms for metabolic engineering applications.

Filipe Liu, Paulo Vilaça, Isabel Rocha, Miguel Rocha

Comput. Methods Programs Biomed., 2015

2014

CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data.

Rafael Carreira, Pedro Evangelista, Paulo Maia, Paulo Vilaça, Marcellinus Pont, Jean-François Tomb, Isabel Rocha, Miguel Rocha

BMC Syst. Biol., 2014

An integrated network visualization framework towards metabolic engineering applications.

Alberto Noronha, Paulo Vilaça, Miguel Rocha

BMC Bioinform., 2014

Evaluating Pathway Enumeration Algorithms in Metabolic Engineering Case Studies.

Filipe Liu, Paulo Vilaça, Isabel Rocha, Miguel Rocha

Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

Reg4OptFlux: an OptFlux plug-in that comprises meta-heuristics approaches for Metabolic engineering using integrated models.

Orlando Rocha, Paulo Vilaça, Miguel Rocha, Rui Mendes

Proceedings of the 2014 Sixth World Congress on Nature and Biologically Inspired Computing, 2014

2013

Network Visualization Tools to Enhance Metabolic Engineering Platforms.

Alberto Noronha, Paulo Vilaça, Miguel Rocha

Proceedings of the 7th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2013

2012

An integrated computational environment for elementary modes analysis of biochemical networks.

Paulo Maia, Paulo Vilaça, Isabel Rocha, Marcellinus Pont, Jean-François Tomb, Miguel Rocha

Int. J. Data Min. Bioinform., 2012

An Algorithm to Assemble Gene-Protein-Reaction Associations for Genome-Scale Metabolic Model Reconstruction.

João G. R. Cardoso, Paulo Vilaça, Simão Soares, Miguel Rocha

Proceedings of the Pattern Recognition in Bioinformatics, 2012

2011

A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information.

Paulo Vilaça, Isabel Rocha, Miguel Rocha

Biosyst., 2011

A Study on the Robustness of Strain Optimization Algorithms.

Paulo Vilaça, Paulo Maia, Miguel Rocha

Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2011

2010

OptFlux: an open-source software platform for in silico metabolic engineering.

Isabel Rocha, Paulo Maia, Pedro Evangelista, Paulo Vilaça, Simão Soares, José P. Pinto, Jens Nielsen, Kiran Raosaheb Patil, Eugénio C. Ferreira, Miguel Rocha

BMC Syst. Biol., 2010

Metaheuristics for Strain Optimization Using Transcriptional Information Enriched Metabolic Models.

Paulo Vilaça, Paulo Maia, Isabel Rocha, Miguel Rocha

Proceedings of the Evolutionary Computation, 2010