Ozan Oktay

Orcid: 0000-0003-2976-0874

According to our database1, Ozan Oktay authored at least 62 papers between 2013 and 2024.

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Bibliography

2024
Multimodal Healthcare AI: Identifying and Designing Clinically Relevant Vision-Language Applications for Radiology.
CoRR, 2024

RAD-DINO: Exploring Scalable Medical Image Encoders Beyond Text Supervision.
CoRR, 2024

2023
RadEdit: stress-testing biomedical vision models via diffusion image editing.
CoRR, 2023

MAIRA-1: A specialised large multimodal model for radiology report generation.
CoRR, 2023

No Fair Lunch: A Causal Perspective on Dataset Bias in Machine Learning for Medical Imaging.
CoRR, 2023

Region-based Contrastive Pretraining for Medical Image Retrieval with Anatomic Query.
CoRR, 2023

Compositional Zero-Shot Domain Transfer with Text-to-Text Models.
CoRR, 2023


Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023

2022
Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing.
Proceedings of the Computer Vision - ECCV 2022, 2022

2021
Active label cleaning: Improving dataset quality under resource constraints.
CoRR, 2021

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs.
CoRR, 2021

2020
Explainable Anatomical Shape Analysis Through Deep Hierarchical Generative Models.
IEEE Trans. Medical Imaging, 2020

2019
Learning-Based Quality Control for Cardiac MR Images.
IEEE Trans. Medical Imaging, 2019

Weakly Supervised Estimation of Shadow Confidence Maps in Fetal Ultrasound Imaging.
IEEE Trans. Medical Imaging, 2019

Attention gated networks: Learning to leverage salient regions in medical images.
Medical Image Anal., 2019

OBELISK-Net: Fewer layers to solve 3D multi-organ segmentation with sparse deformable convolutions.
Medical Image Anal., 2019

Evaluating reinforcement learning agents for anatomical landmark detection.
Medical Image Anal., 2019

Explainable Shape Analysis through Deep Hierarchical Generative Models: Application to Cardiac Remodeling.
CoRR, 2019

Automated Quality Control in Image Segmentation: Application to the UK Biobank Cardiac MR Imaging Study.
CoRR, 2019

Image-and-Spatial Transformer Networks for Structure-Guided Image Registration.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

2018
Anatomically Constrained Neural Networks (ACNNs): Application to Cardiac Image Enhancement and Segmentation.
IEEE Trans. Medical Imaging, 2018

Attention-Gated Networks for Improving Ultrasound Scan Plane Detection.
CoRR, 2018

Attention U-Net: Learning Where to Look for the Pancreas.
CoRR, 2018

Learning-Based Quality Control for Cardiac MR Images.
CoRR, 2018

TernaryNet: faster deep model inference without GPUs for medical 3D segmentation using sparse and binary convolutions.
Int. J. Comput. Assist. Radiol. Surg., 2018

A Comprehensive Approach for Learning-Based Fully-Automated Inter-slice Motion Correction for Short-Axis Cine Cardiac MR Image Stacks.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

AutoDVT: Joint Real-Time Classification for Vein Compressibility Analysis in Deep Vein Thrombosis Ultrasound Diagnostics.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Adversarial and Perceptual Refinement for Compressed Sensing MRI Reconstruction.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Cardiac MR Segmentation from Undersampled k-space Using Deep Latent Representation Learning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Bayesian Deep Learning for Accelerated MR Image Reconstruction.
Proceedings of the Machine Learning for Medical Image Reconstruction, 2018


On the Adaptability of Unsupervised CNN-Based Deformable Image Registration to Unseen Image Domains.
Proceedings of the Machine Learning in Medical Imaging - 9th International Workshop, 2018

Learning Interpretable Anatomical Features Through Deep Generative Models: Application to Cardiac Remodeling.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Recurrent Neural Networks for Aortic Image Sequence Segmentation with Sparse Annotations.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Automatic View Planning with Multi-scale Deep Reinforcement Learning Agents.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Abstract: Exploring Sparsity in CNNs for Medical Image Segmentation BRIEFnet.
Proceedings of the Bildverarbeitung für die Medizin 2018 - Algorithmen - Systeme, 2018

2017
Fully Convolutional Networks in Medical Imaging: Applications to Image Enhancement and Recognition.
Proceedings of the Deep Learning and Convolutional Neural Networks for Medical Image Computing, 2017

Learning anatomical image representations for cardiac imaging.
PhD thesis, 2017

DeepCut: Object Segmentation From Bounding Box Annotations Using Convolutional Neural Networks.
IEEE Trans. Medical Imaging, 2017

Stratified Decision Forests for Accurate Anatomical Landmark Localization in Cardiac Images.
IEEE Trans. Medical Imaging, 2017

Human-level CMR image analysis with deep fully convolutional networks.
CoRR, 2017

Anatomically Constrained Neural Networks (ACNN): Application to Cardiac Image Enhancement and Segmentation.
CoRR, 2017

Fully Automated Segmentation-Based Respiratory Motion Correction of Multiplanar Cardiac Magnetic Resonance Images for Large-Scale Datasets.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Context-Sensitive Super-Resolution for Fast Fetal Magnetic Resonance Imaging.
Proceedings of the Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment, 2017

BRIEFnet: Deep Pancreas Segmentation Using Binary Sparse Convolutions.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Fetal Skull Segmentation in 3D Ultrasound via Structured Geodesic Random Forest.
Proceedings of the Fetal, Infant and Ophthalmic Medical Image Analysis, 2017

Semi-supervised Learning for Network-Based Cardiac MR Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Learning-Based Heart Coverage Estimation for Short-Axis Cine Cardiac MR Images.
Proceedings of the Functional Imaging and Modelling of the Heart, 2017

2016
Standardized Evaluation System for Left Ventricular Segmentation Algorithms in 3D Echocardiography.
IEEE Trans. Medical Imaging, 2016

Learning under Distributed Weak Supervision.
CoRR, 2016

DeepCut: Object Segmentation from Bounding Box Annotations using Convolutional Neural Networks.
CoRR, 2016

Multi-input Cardiac Image Super-Resolution Using Convolutional Neural Networks.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Accurate Intervertebral Disc Localisation and Segmentation in MRI Using Vantage Point Hough Forests and Multi-atlas Fusion.
Proceedings of the Computational Methods and Clinical Applications for Spine Imaging, 2016

Respiratory Motion Correction for 2D Cine Cardiac MR Images using Probabilistic Edge Maps.
Proceedings of the Computing in Cardiology, CinC 2016, Vancouver, 2016

2015
Structured Decision Forests for Multi-modal Ultrasound Image Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Automated Localization of Fetal Organs in MRI Using Random Forests with Steerable Features.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Beyond the AHA 17-Segment Model: Motion-Driven Parcellation of the Left Ventricle.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2015

Classification of Myocardial Infarcted Patients by Combining Shape and Motion Features.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2015

Probabilistic Edge Map (PEM) for 3D Ultrasound Image Registration and Multi-atlas Left Ventricle Segmentation.
Proceedings of the Functional Imaging and Modeling of the Heart, 2015

Learning a Global Descriptor of Cardiac Motion from a Large Cohort of 1000+ Normal Subjects.
Proceedings of the Functional Imaging and Modeling of the Heart, 2015

2013
Biomechanically Driven Registration of Pre- to Intra-Operative 3D Images for Laparoscopic Surgery.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013


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