Patrick D. Schloss

According to our database, Patrick D. Schloss authored at least 11 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Best practices to evaluate the impact of biomedical research software - metric collection beyond citations.

Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright

Bioinform., 2024

2023

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright

CoRR, 2023

2021

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines.

Begüm D. Topçuoglu, Zena Lapp, Kelly L. Sovacool, Evan S. Snitkin, Jenna Wiens, Patrick D. Schloss

J. Open Source Softw., 2021

2020

Ten simple rules to increase computational skills among biologists with Code Clubs.

Ada K. Hagan, Nicholas A. Lesniak, Marcy J. Balunas, Lucas Bishop, William L. Close, Matthew D. Doherty, Amanda G. Elmore, Kaitlin J. Flynn, Geoffrey D. Hannigan, Charlie C. Koumpouras, Matthew L. Jenior, Ariangela J. Kozik, Kathryn McBride, Samara B. Rifkin, Joshua M. A. Stough, Kelly L. Sovacool, Marc A. Sze, Sarah Tomkovich, Begüm D. Topçuoglu, Patrick D. Schloss

PLoS Comput. Biol., 2020

2018

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome.

Geoffrey D. Hannigan, Melissa Beth Duhaime, Danai Koutra, Patrick D. Schloss

PLoS Comput. Biol., 2018

2012

Bioinformatics for the Human Microbiome Project.

Dirk Gevers, Mihai Pop, Patrick D. Schloss, Curtis Huttenhower

PLoS Comput. Biol., 2012

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome.

Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Kelley, Barbara A. Methé, Patrick D. Schloss, Dirk Gevers, Makedonka Dautova Mitreva, Curtis Huttenhower

PLoS Comput. Biol., 2012

2010

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies.

Patrick D. Schloss

PLoS Comput. Biol., 2010

Automated GMP production of [11C]PR04.MZ via the captive solvent method and PET studies in non-human primates: A promising tracer for extrastriatal DAT imaging.

Patrick J. Riss, Jacob M. Hooker, David L. Alexoff, Sung-Won Kim, Rene Hummerich, Valentina Ferrari, Patrick D. Schloss, Joanna S. Fowler, Frank Roesch, Franklin I. Aigbirhio

NeuroImage, 2010

2008

A statistical toolbox for metagenomics: assessing functional diversity in microbial communities.

Patrick D. Schloss, Jo Handelsman

BMC Bioinform., 2008

2006

Toward a Census of Bacteria in Soil.

Patrick D. Schloss, Jo Handelsman

PLoS Comput. Biol., 2006