Pavel Tomancak

According to our database, Pavel Tomancak authored at least 24 papers between 2008 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

EmbedSeg: Embedding-based Instance Segmentation for Biomedical Microscopy Data.

Manan Lalit, Pavel Tomancak, Florian Jug

Medical Image Anal., 2022

LABKIT: Labeling and Segmentation Toolkit for Big Image Data.

Matthias Arzt, Joran Deschamps, Christopher Schmied, Tobias Pietzsch, Deborah Schmidt, Pavel Tomancak, Robert Haase, Florian Jug

Frontiers Comput. Sci., 2022

2021

Embedding-based Instance Segmentation of Microscopy Images.

Manan Lalit, Pavel Tomancak, Florian Jug

CoRR, 2021

Embedding-based Instance Segmentation in Microscopy.

Manan Lalit, Pavel Tomancak, Florian Jug

Proceedings of the Medical Imaging with Deep Learning, 7-9 July 2021, Lübeck, Germany., 2021

2020

Fully Unsupervised Probabilistic Noise2Void.

Mangal Prakash, Manan Lalit, Pavel Tomancak, Alexander Krull, Florian Jug

Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Leveraging Self-supervised Denoising for Image Segmentation.

Mangal Prakash, Tim-Oliver Buchholz, Manan Lalit, Pavel Tomancak, Florian Jug, Alexander Krull

Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Registration of Multi-modal Volumetric Images by Establishing Cell Correspondence.

Manan Lalit, Mette Handberg-Thorsager, Yu-Wen Hsieh, Florian Jug, Pavel Tomancak

Proceedings of the Computer Vision - ECCV 2020 Workshops, 2020

2019

scenery - Flexible Virtual Reality Visualisation on the Java VM.

Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I. S. Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini

CoRR, 2019

SPIM workflow manager for HPC.

Jan Kozuszník, Petr Bainar, Jana Klímová, Michal Krumnikl, Pavel Moravec, Václav Svaton, Pavel Tomancák

Bioinform., 2019

scenery: Flexible Virtual Reality Visualization on the Java VM.

Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I. S. Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini

Proceedings of the 30th IEEE Visualization Conference, 2019

HPC-as-a-Service via HEAppE Platform.

Vaclav Svaton, Jan Martinovic, Jan Krenek, Thomas Esch, Pavel Tomancak

Proceedings of the Complex, Intelligent, and Software Intensive Systems, 2019

2018

SciJava Interface for Parallel Execution in the ImageJ Ecosystem.

Michal Krumnikl, Petr Bainar, Jana Klímová, Jan Kozuszník, Pavel Moravec, Václav Svaton, Pavel Tomancák

Proceedings of the Computer Information Systems and Industrial Management, 2018

2016

An automated workflow for parallel processing of large multiview SPIM recordings.

Christopher Schmied, Peter Steinbach, Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak

Bioinform., 2016

Exploring Time-dependent Scientific Data Using Spatially Aware Mobiles and Large Displays.

Hendrik Sollich, Ulrich von Zadow, Tobias Pietzsch, Pavel Tomancak, Raimund Dachselt

Proceedings of the 2016 ACM on Interactive Surfaces and Spaces, 2016

2014

BigDataViewer: Interactive Visualization and Image Processing for Terabyte Data Sets.

Tobias Pietzsch, Stephan Saalfeld, Stephan Preibisch, Pavel Tomancak

CoRR, 2014

2012

ImgLib2 - generic image processing in Java.

Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak, Stephan Saalfeld

Bioinform., 2012

2011

linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type.

Alex T. Kalinka, Pavel Tomancak

Bioinform., 2011

2010

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets.

Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak

Bioinform., 2010

An alignment-free method to identify candidate orthologous enhancers in multiple <i>Drosophila</i> genomes.

Arunachalam Manonmani, Karthik Jayasurya, Pavel Tomancak, Uwe Ohler

Bioinform., 2010

2009

CATMAID: collaborative annotation toolkit for massive amounts of image data.

Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak

Bioinform., 2009

Globally optimal stitching of tiled 3D microscopic image acquisitions.

Stephan Preibisch, Stephan Saalfeld, Pavel Tomancak

Bioinform., 2009

Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching.

Stephan Preibisch, Stephan Saalfeld, Torsten Rohlfing, Pavel Tomancak

Proceedings of the Medical Imaging 2009: Image Processing, 2009

2008

Mosaicing of single plane illumination microscopy images using groupwise registration and fast content-based image fusion.

Stephan Preibisch, Torsten Rohlfing, Michael P. Hasak, Pavel Tomancak

Proceedings of the Medical Imaging 2008: Image Processing, 2008

Towards digital representation of Drosophila embryogenesis.

Stephan Preibisch, Radoslaw Ejsmont, Torsten Rohlfing, Pavel Tomancak

Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008