Stephan Saalfeld

According to our database, Stephan Saalfeld authored at least 19 papers between 2009 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction.

Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga

IEEE Trans. Pattern Anal. Mach. Intell., 2019

2018

Joint Deformable Registration of Large EM Image Volumes: A Matrix Solver Approach.

Khaled Khairy, Gennady Denisov, Stephan Saalfeld

CoRR, 2018

Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain.

Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

The candidate multi-cut for cell segmentation.

Jan Funke, Chong Zhang, Tobias Pietzsch, Miguel Ángel González Ballester, Stephan Saalfeld

Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017

Whole-brain serial-section electron microscopy in larval zebrafish.

David Grant Colburn Hildebrand, Marcelo Cicconet, Russel Miguel Torres, Woohyuk Choi, Tran Minh Quan, Jungmin Moon, Arthur W. Wetzel, Andrew Scott Champion, Brett J. Graham, Owen Randlett, George S. Plummer, Ruben Portugues, Isaac Henry Bianco, Stephan Saalfeld, Alexander D. Baden, Kunal Lillaney, Randal C. Burns, Joshua T. Vogelstein, Alexander Schier, Wei-Chung Allen Lee, Won-Ki Jeong, Jeff William Lichtman, Florian Engert

Nat., 2017

A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs.

Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga

CoRR, 2017

The Candidate Multi-Cut for Cell Segmentation.

Jan Funke, Chong Zhang, Tobias Pietzsch, Stephan Saalfeld

CoRR, 2017

Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy.

Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld

Bioinform., 2017

PreMosa: extracting 2D surfaces from 3D microscopy mosaics.

Corinna Blasse, Stephan Saalfeld, Raphaël Etournay, Andreas Sagner, Suzanne Eaton, Eugene W. Myers

Bioinform., 2017

Deep Learning for Isotropic Super-Resolution from Non-isotropic 3D Electron Microscopy.

Larissa Heinrich, John A. Bogovic, Stephan Saalfeld

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

2016

Robust registration of calcium images by learned contrast synthesis.

John A. Bogovic, Philipp Hanslovsky, Allan Wong, Stephan Saalfeld

Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015

Image based compensation for thickness variation in microscopy section series.

Philipp Hanslovsky, John A. Bogovic, C. Shan Xu, Kenneth J. Hayworth, Zhiyuan Lu, Harald F. Hess, Stephan Saalfeld

CoRR, 2015

Post-acquisition image based compensation for thickness variation in microscopy section series.

Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014

BigDataViewer: Interactive Visualization and Image Processing for Terabyte Data Sets.

Tobias Pietzsch, Stephan Saalfeld, Stephan Preibisch, Pavel Tomancak

CoRR, 2014

2012

ImgLib2 - generic image processing in Java.

Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak, Stephan Saalfeld

Bioinform., 2012

2010

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets.

Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak

Bioinform., 2010

2009

CATMAID: collaborative annotation toolkit for massive amounts of image data.

Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak

Bioinform., 2009

Globally optimal stitching of tiled 3D microscopic image acquisitions.

Stephan Preibisch, Stephan Saalfeld, Pavel Tomancak

Bioinform., 2009

Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching.

Stephan Preibisch, Stephan Saalfeld, Torsten Rohlfing, Pavel Tomancak

Proceedings of the Medical Imaging 2009: Image Processing, 2009