Pavlos Pavlidis

According to our database, Pavlos Pavlidis authored at least 16 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Genome-wide scans for selective sweeps using convolutional neural networks.

Hanqing Zhao, Matthijs Leon Souilljee, Pavlos Pavlidis, Nikolaos Alachiotis

Bioinform., 2023

SweepNet: A Lightweight CNN Architecture for the Classification of Adaptive Genomic Regions.

Hanqing Zhao, Pavlos Pavlidis, Nikolaos Alachiotis

Proceedings of the Platform for Advanced Scientific Computing Conference, 2023

2022

Cronos: A Machine Learning Pipeline for Description and Predictive Modeling of Microbial Communities Over Time.

Aristeidis Litos, Evangelia Intze, Pavlos Pavlidis, Ilias Lagkouvardos

Frontiers Bioinform., 2022

2021

Structural classification of proteins based on the computationally efficient recurrence quantification analysis and horizontal visibility graphs.

Michaela Areti Zervou, Effrosyni Doutsi, Pavlos Pavlidis, Panagiotis Tsakalides

Bioinform., 2021

2020

Efficient Dynamic Analysis of Low-similarity Proteins for Structural Class Prediction.

Michaela Areti Zervou, Effrosyni Doutsi, Pavlos Pavlidis, Panagiotis Tsakalides

Proceedings of the 28th European Signal Processing Conference, 2020

qLD: High-performance Computation of Linkage Disequilibrium on CPU and GPU.

Charalampos Theodoris, Nikolaos Alachiotis, Tze Meng Low, Pavlos Pavlidis

Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020

2017

VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences.

Duo Xu, Yousef Jaber, Pavlos Pavlidis, Omer Gokcumen

BMC Bioinform., 2017

Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo.

Paschalia Kapli, Sarah Lutteropp, Jiajie Zhang, Kassian Kobert, Pavlos Pavlidis, Alexandros Stamatakis, Tomás Flouri

Bioinform., 2017

Deploying FPGAs to future-proof genome-wide analyses based on linkage disequilibrium.

Dimitrios Bozikas, Nikolaos Alachiotis, Pavlos Pavlidis, Euripides Sotiriades, Apostolos Dollas

Proceedings of the 27th International Conference on Field Programmable Logic and Applications, 2017

2014

1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans.

Marc Pybus, Giovanni Marco Dall'Olio, Pierre Luisi, Manu Uzkudun, Angel Carreño-Torres, Pavlos Pavlidis, Hafid Laayouni, Jaume Bertranpetit, Johannes Engelken

Nucleic Acids Res., 2014

2013

A general species delimitation method with applications to phylogenetic placements.

Jiajie Zhang, Paschalia Kapli, Pavlos Pavlidis, Alexandros Stamatakis

Bioinform., 2013

Accelerating String Matching on MIC Architecture for Motif Extraction.

Solon P. Pissis, Christian Goll, Pavlos Pavlidis, Alexandros Stamatakis

Proceedings of the Parallel Processing and Applied Mathematics, 2013

MoTeX: A word-based HPC tool for MoTif eXtraction.

Solon P. Pissis, Alexandros Stamatakis, Pavlos Pavlidis

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets.

Nikolaos Alachiotis, Alexandros Stamatakis, Pavlos Pavlidis

Bioinform., 2012

Exploiting Multi-grain Parallelism for Efficient Selective Sweep Detection.

Nikolaos Alachiotis, Pavlos Pavlidis, Alexandros Stamatakis

Proceedings of the Algorithms and Architectures for Parallel Processing, 2012

2006

Individualized markers optimize class prediction of microarray data.

Pavlos Pavlidis, Panayiota Poirazi

BMC Bioinform., 2006