Perry G. Ridge

According to our database, Perry G. Ridge authored at least 16 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Evaluating a large language model's ability to solve programming exercises from an introductory bioinformatics course.

Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge

PLoS Comput. Biol., 2023

Many bioinformatics programming tasks can be automated with ChatGPT.

Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge

CoRR, 2023

2019

JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm.

Justin Miller, Brandon D. Pickett, Perry G. Ridge

Bioinform., 2019

2017

Kmer-SSR: a fast and exhaustive SSR search algorithm.

Brandon D. Pickett, Justin Miller, Perry G. Ridge

Bioinform., 2017

2016

Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches.

Mark T. W. Ebbert, Mark E. Wadsworth, Lyndsay A. Staley, Kaitlyn L. Hoyt, Brandon D. Pickett, Justin Miller, John Duce, John S. K. Kauwe, Perry G. Ridge

BMC Bioinform., 2016

A novel approach for multi-SNP GWAS and its application in Alzheimer's disease.

Paul M. Bodily, M. Stanley Fujimoto, Justin T. Page, Mark J. Clement, Mark T. W. Ebbert, Perry G. Ridge

BMC Bioinform., 2016

SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences.

Brandon D. Pickett, S. M. Karlinsey, C. E. Penrod, Michael J. Cormier, Mark T. W. Ebbert, Dennis K. Shiozawa, C. J. Whipple, Perry G. Ridge

Bioinform., 2016

2014

Population substructure in Cache County, Utah: the Cache County study.

Aaron R. Sharp, Perry G. Ridge, Matthew H. Bailey, Kevin L. Boehme, Maria C. Norton, JoAnn T. Tschanz, Ronald G. Munger, Christopher D. Corcoran, John S. K. Kauwe

BMC Bioinform., 2014

Mitochondrial genomic variation associated with higher mitochondrial copy number: the Cache County Study on Memory Health and Aging.

Perry G. Ridge, Taylor J. Maxwell, Spencer J. Foutz, Matthew H. Bailey, Christopher D. Corcoran, JoAnn T. Tschanz, Maria C. Norton, Ronald G. Munger, Elizabeth O'Brien, Richard A. Kerber, Richard M. Cawthon, John S. K. Kauwe

BMC Bioinform., 2014

Variant Tool Chest: an improved tool to analyze and manipulate variant call format (VCF) files.

Mark T. W. Ebbert, Mark E. Wadsworth, Kevin L. Boehme, Kaitlyn L. Hoyt, Aaron R. Sharp, Brendan D. O'Fallon, John S. K. Kauwe, Perry G. Ridge

BMC Bioinform., 2014

Haplotype-centered mapping for improved alignments and genetic association studies.

Paul M. Bodily, Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, Perry G. Ridge

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Cystic fibrosis testing in a referral laboratory: results and lessons from a six-year period.

Perry G. Ridge, Christine Miller, Pinar Bayrak-Toydemir, D. Hunter Best, Rong Mao, Jeffrey J. Swensen, Elaine Lyon, Karl V. Voelkerding

J. Clin. Bioinform., 2013

2010

Feature selection for characterizing HLA class I peptide motif anchors.

Perry G. Ridge, David K. Crockett

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

A novel representation of HLA allele specificity and prediction algorithm for HLA class I binding.

David K. Crockett, Perry G. Ridge

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2007

Phylogenies scores for exhaustive searches and parsimony scores searches.

Hyrum Carroll, Perry G. Ridge, Mark J. Clement, Quinn Snell

Int. J. Bioinform. Res. Appl., 2007

2006

Large Grain Size Stochastic Optimization Alignment.

Perry G. Ridge, Hyrum Carroll, Dan Sneddon, Mark J. Clement, Quinn Snell

Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006