Mark J. Clement

Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium Workshops, 2020

2019

When the How Outweighs the What: the Pivotal Importance of Context.

[BibT_eX]

[DOI]

Marianna J. Martindale

Gordon Broderick

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Feedback Regulation of Immune Response to Maximum Exercise in Gulf War Illness.

[BibT_eX]

[DOI]

Cole A. Lyman

Travis J. A. Craddock

Mary Fletcher

Nancy G. Klimas

Gordon Broderick

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

The PepSeq Pipeline: Software for Antimicrobial Motif Discovery in Randomly-Generated Peptide Libraries.

[BibT_eX]

[DOI]

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

The OGCleaner: filtering false-positive homology clusters.

[BibT_eX]

[DOI]

Bioinform., 2017

Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs.

[BibT_eX]

[DOI]

Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction.

[BibT_eX]

[DOI]

Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

Modeling Global and local Codon Bias with Deep Language Models.

[BibT_eX]

[DOI]

Masaki Stanley Fujimoto

Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

2016

Detecting false positive sequence homology: a machine learning approach.

[BibT_eX]

[DOI]

BMC Bioinform., 2016

A novel approach for multi-SNP GWAS and its application in Alzheimer's disease.

[BibT_eX]

[DOI]

BMC Bioinform., 2016

ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction.

[BibT_eX]

[DOI]

Bioinform., 2016

2015

Heterozygous genome assembly via binary classification of homologous sequence.

[BibT_eX]

[DOI]

BMC Bioinform., 2015

2014

Effects of error-correction of heterozygous next-generation sequencing data.

[BibT_eX]

[DOI]

BMC Bioinform., 2014

A structured approach to ensemble learning for Alzheimer's disease prediction.

[BibT_eX]

[DOI]

Matthew Seeley

Christophe G. Giraud-Carrier

Paul M. Bodily

Stanley Fujimoto

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Haplotype-centered mapping for improved alignments and genetic association studies.

[BibT_eX]

[DOI]

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Probabilistic inference and ranking of gene regulatory pathways as a shortest-path problem.

[BibT_eX]

[DOI]

BMC Bioinform., 2013

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data.

[BibT_eX]

[DOI]

BMC Bioinform., 2013

Feature identification and reduction for improved generalization accuracy in secondary-structure prediction.

[BibT_eX]

[DOI]

Matt Seeley

Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

Identification and correction of substitution errors in Moleculo long reads.

[BibT_eX]

[DOI]

Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

Application of a MAX-CUT Heuristic to the Contig Orientation Problem in Genome Assembly.

[BibT_eX]

[DOI]

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

Phylogenetic search through partial tree mixing.

[BibT_eX]

[DOI]

BMC Bioinform., 2012

Parallel Pair-HMM SNP Detection.

[BibT_eX]

[DOI]

Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

HiCOMB Introduction.

[BibT_eX]

[DOI]

Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

2011

Parallel Mapping Approaches for GNUMAP.

[BibT_eX]

[DOI]

Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

2010

The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing.

[BibT_eX]

[DOI]

Bioinform., 2010

PathGen: a transitive gene pathway generator.

[BibT_eX]

[DOI]

Bioinform., 2010

On the use of cartographic projections in visualizing phylo-genetic tree space.

[BibT_eX]

[DOI]

Kenneth Sundberg

Algorithms Mol. Biol., 2010

The Impact of Equally-Optimal Pairwise Alignments.

[BibT_eX]

Lukas Olson

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

Spatially Indexing Sequences using Hashes.

[BibT_eX]

Mike Eagar

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

2009

An open source phylogenetic search and alignment package.

[BibT_eX]

[DOI]

Int. J. Bioinform. Res. Appl., 2009

Visualizing Phylogenetic Treespace Using Cartographic Projections.

[BibT_eX]

[DOI]

Kenneth Sundberg

Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009

Inferring Gene Regulatory Networks from Asynchronous Microarray Data.

[BibT_eX]

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

Analysis of Long Branch Extraction.

[BibT_eX]

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008

Parsimony accelerated Maximum Likelihood searches.

[BibT_eX]

[DOI]

Int. J. Comput. Biol. Drug Des., 2008

Genomic Scale Reconstruction of Gene Regulatory Networks from Microarray Data.

[BibT_eX]

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Incomparability of Results Between Phylogenetic Search Programs.

[BibT_eX]

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007

Pharmacogenomics: analysing SNPs in the CYP2D6 gene using amino acid properties.

[BibT_eX]

[DOI]

Int. J. Bioinform. Res. Appl., 2007

Phylogenies scores for exhaustive searches and parsimony scores searches.

[BibT_eX]

[DOI]

Int. J. Bioinform. Res. Appl., 2007

DNA reference alignment benchmarks based on tertiary structure of encoded proteins.

[BibT_eX]

[DOI]

Bioinform., 2007

Analyzing Gene Relationships for Down Syndrome with Labeled Transition Graphs.

[BibT_eX]

[DOI]

Proceedings of the Formal Methods in Computer-Aided Design, 7th International Conference, 2007

Using Parsimony to Guide Maximum Likelihood Searches.

[BibT_eX]

[DOI]

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Jumpstarting phylogenetic analysis.

[BibT_eX]

[DOI]

Int. J. Bioinform. Res. Appl., 2006

Large Grain Size Stochastic Optimization Alignment.

[BibT_eX]

[DOI]

Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2004

Aggressive telecommunications overbooking ratios.

[BibT_eX]

[DOI]

Proceedings of the 23rd IEEE International Performance Computing and Communications Conference, 2004

A Survivable Multi-agent Approach to Network Routing.

[BibT_eX]

Casey T. Deccio

Proceedings of the International Conference on Communications in Computing, 2004

Temporal Difference Learning in Network Routing.

[BibT_eX]

Reid Broadbent

Casey T. Deccio

Proceedings of the International Conference on Communications in Computing, 2004

2002

Preemption Based Backfill.

[BibT_eX]

[DOI]

David B. Jackson

Proceedings of the Job Scheduling Strategies for Parallel Processing, 2002

TCS: Estimating Gene Genealogies.

[BibT_eX]

[DOI]

Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

An Enterprise-Based Grid Resource Management System.

[BibT_eX]

[DOI]

Proceedings of the 11th IEEE International Symposium on High Performance Distributed Computing (HPDC-11 2002), 2002

2001

Object Placement Using Performance Surfaces.

[BibT_eX]

[DOI]

André Turgeon

Clust. Comput., 2001

The YGuard access control model: set-based access control.

[BibT_eX]

[DOI]

Ty van den Akker

Proceedings of the 6th ACM Symposium on Access Control Models and Technologies, 2001

Performance of Finite Field Arithmetic in an Elliptic Curve Cryptosystem.

[BibT_eX]

[DOI]

Zhi Li

John Higgins

Proceedings of the 9th International Workshop on Modeling, 2001

Core Algorithms of the Maui Scheduler.

[BibT_eX]

[DOI]

David B. Jackson

Proceedings of the Job Scheduling Strategies for Parallel Processing, 2001

Livelock Avoidance for Meta-Schedulers.

[BibT_eX]

[DOI]

John Jardine

Proceedings of the 10th IEEE International Symposium on High Performance Distributed Computing (HPDC-10 2001), 2001

2000

Parallel Phylogenetic Inference.

[BibT_eX]

[DOI]

Proceedings of the Proceedings Supercomputing 2000, 2000

The Performance Impact of Advance Reservation Meta-scheduling.

[BibT_eX]

[DOI]

Proceedings of the Job Scheduling Strategies for Parallel Processing, IPDPS 2000 Workshop, 2000

Application Placement using Performance Surfaces.

[BibT_eX]

[DOI]

André Turgeon

Proceedings of the Ninth IEEE International Symposium on High Performance Distributed Computing, 2000

1999

Editorial.

[BibT_eX]

[DOI]

Xian-He Sun

J. Supercomput., 1999

Performance Surface Prediction for WAN-Based Clusters.

[BibT_eX]

[DOI]

J. Supercomput., 1999

The DOGMA Approach to Parallel and Distributed Computing.

[BibT_eX]

[DOI]

Scalable Comput. Pract. Exp., 1999

High Performance Scheduling for Windows NT.

[BibT_eX]

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1999

Design Issues for Efficient Implementation of MPI in Java.

[BibT_eX]

[DOI]

Proceedings of the ACM 1999 Conference on Java Grande, JAVA '99, San Francisco, CA, USA, 1999

High Performance Computing for the Masses.

[BibT_eX]

[DOI]

Proceedings of the Parallel and Distributed Processing, 1999

High Performance Phylogenetic Inference.

[BibT_eX]

[DOI]

Proceedings of the Eighth IEEE International Symposium on High Performance Distributed Computing, 1999

A Performance Broker for CORBA.

[BibT_eX]

[DOI]

Kevin Butler

Proceedings of the Eighth IEEE International Symposium on High Performance Distributed Computing, 1999

Parallel Algorithm and Processor Selection Based on Fuzzy Logic.

[BibT_eX]

[DOI]

Proceedings of the High-Performance Computing and Networking, 7th International Conference, 1999

1998

DOGMA: distributed object group metacomputing architecture.

[BibT_eX]

[DOI]

Concurr. Pract. Exp., 1998

The DOGMA Approach to High-Utilization Supercomputing.

[BibT_eX]

[DOI]

Proceedings of the Seventh IEEE International Symposium on High Performance Distributed Computing, 1998

Performance Surface Prediction for WAN-Based Clusters.

[BibT_eX]

[DOI]

Proceedings of the Thirty-First Annual Hawaii International Conference on System Sciences, 1998

1997

Automated Performance Prediction for Scalable Parallel Computing.

[BibT_eX]

[DOI]

Parallel Comput., 1997

The Chordal Spoke ATM Interconnection Network.

[BibT_eX]

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1997

Distributed Polyphonic Music Synthesis.

[BibT_eX]

[DOI]

John Williams

Proceedings of the 6th International Symposium on High Performance Distributed Computing, 1997

Parallel Programming in Multi-Paradigm Clusters.

[BibT_eX]

[DOI]

Johann Leichtl

Phyllis Crandall

Proceedings of the 6th International Symposium on High Performance Distributed Computing, 1997

1996

Network Performance Modeling for PVM Clusters.

[BibT_eX]

[DOI]

Michael R. Steed

Phyllis E. Crandall

Proceedings of the 1996 ACM/IEEE Conference on Supercomputing, 1996

Cost Optimal Analysis for Workstation Clusters.

[BibT_eX]

J. Kelly Flanagan

Michael R. Steed

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1996

Performance Prediction of PVM Programs.

[BibT_eX]

[DOI]

Michael R. Steed

Proceedings of IPPS '96, 1996

Performance Comparison of Desktop Multiprocessing and Workstation Cluster Computing.

[BibT_eX]

[DOI]

Phyllis Crandall

Eranti V. Sumithasri

Proceedings of the 5th International Symposium on High Performance Distributed Computing (HPDC '96), 1996

1995

Overlapping Computations, Communications and I/O in parallel Sorting.

[BibT_eX]

[DOI]

J. Parallel Distributed Comput., 1995

The Round Table ATM Interconnection Network.

[BibT_eX]

Wei Wei

J. Kelly Flanagan

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1995

Symbolic performance prediction of scalable parallel programs.

[BibT_eX]

[DOI]

Proceedings of IPPS '95, 1995

Multivariate statistical techniques for parallel performance prediction.

[BibT_eX]

[DOI]

Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995

1993

Analytical performance prediction on multicomputers.

[BibT_eX]

[DOI]

Proceedings of the Proceedings Supercomputing '93, 1993

1992

Hyperweave: A Fault-Tolerant Expandable Interconnection Network.

[BibT_eX]

[DOI]

Gowri Ramanathan