Peter D. Vize

According to our database, Peter D. Vize authored at least 19 papers between 2003 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms.

Bradley I. Arshinoff, Gregory A. Cary, Kamran Karimi, Saoirse Foley, Sergei Agalakov, Francisco Delgado, Vaneet S. Lotay, Carolyn Ku, Troy J. Pells, Thomas R. Beatman, Eugene Kim, R. Andrew Cameron, Peter D. Vize, Cheryl A. Telmer, Jenifer C. Croce, Charles A. Ettensohn, Veronica F. Hinman

Nucleic Acids Res., 2022

The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development.

Malcolm E. Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu, Troy J. Pells, David Osumi-Sutherland, Praneet Chaturvedi, Christina James-Zorn, Nivitha Sundararaj, Vaneet S. Lotay, Virgilio Ponferrada, Dong Zhuo Wang, Eugene Kim, Sergei Agalakov, Bradley I. Arshinoff, Kamran Karimi, Peter D. Vize, Aaron M. Zorn

BMC Bioinform., 2022

2021

Classifying domain-specific text documents containing ambiguous keywords.

Kamran Karimi, Sergei Agalakov, Cheryl A. Telmer, Thomas R. Beatman, Troy J. Pells, Bradley I. M. Arshinoff, Carolyn Ku, Saoirse Foley, Veronica F. Hinman, Charles A. Ettensohn, Peter D. Vize

Database J. Biol. Databases Curation, 2021

Integration of 1: 1 orthology maps and updated datasets into Echinobase.

Saoirse Foley, Carolyn Ku, Brad Arshinoff, Vaneet Lotay, Kamran Karimi, Peter D. Vize, Veronica F. Hinman

Database J. Biol. Databases Curation, 2021

2020

Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database.

Joshua D. Fortriede, Troy J. Pells, Stanley Chu, Praneet Chaturvedi, Dong Zhou Wang, Malcolm E. Fisher, Christina James-Zorn, Ying Wang, Mardi J. Nenni, Kevin A. Burns, Vaneet Lotay, Virgilio G. Ponferrada, Kamran Karimi, Aaron M. Zorn, Peter D. Vize

Nucleic Acids Res., 2020

2018

Xenbase: a genomic, epigenomic and transcriptomic model organism database.

Kamran Karimi, Joshua D. Fortriede, Vaneet Lotay, Kevin A. Burns, Dong Zhou Wang, Malcolm E. Fisher, Troy J. Pells, Christina James-Zorn, Ying Wang, Virgilio G. Ponferrada, Stanley Chu, Praneet Chaturvedi, Aaron M. Zorn, Peter D. Vize

Nucleic Acids Res., 2018

Visualization of Gene Expression and Expression as a Phenotype with the XPO, XAO and DO using a Combination of Experimental Data Sources.

Troy J. Pells, Malcolm E. Fisher, Erik Segerdell, Joshua D. Fortriede, Kevin A. Burns, Stanley Chu, Praneet Chaturvedi, Christina James-Zorn, Vaneet Lotay, Mardi J. Nenni, Virgilio G. Ponferrada, Dong Zhou Wang, Ying Wang, Kamran Karimi, Peter D. Vize, Aaron M. Zorn

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2015

Xenbase, the <i>Xenopus</i> model organism database; new virtualized system, data types and genomes.

J. Brad Karpinka, Joshua D. Fortriede, Kevin A. Burns, Christina James-Zorn, Virgilio G. Ponferrada, Jacqueline Lee, Kamran Karimi, Aaron M. Zorn, Peter D. Vize

Nucleic Acids Res., 2015

2014

The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud.

Kamran Karimi, Peter D. Vize

Database J. Biol. Databases Curation, 2014

Staging the Self-Assembly Process: Inspiration from Biological Development.

Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob

Artif. Life, 2014

2013

Xenbase: expansion and updates of the <i>Xenopus</i> model organism database.

Christina James-Zorn, Virgilio G. Ponferrada, Chris Jarabek, Kevin A. Burns, Erik Segerdell, Jacqueline Lee, Kevin A. Snyder, Bishnu Bhattacharyya, J. Brad Karpinka, Joshua D. Fortriede, Jeff B. Bowes, Aaron M. Zorn, Peter D. Vize

Nucleic Acids Res., 2013

Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.

Erik Segerdell, Virgilio G. Ponferrada, Christina James-Zorn, Kevin A. Burns, Joshua D. Fortriede, Wasila M. Dahdul, Peter D. Vize, Aaron M. Zorn

J. Biomed. Semant., 2013

The Xenbase literature curation process.

Jeff B. Bowes, Kevin A. Snyder, Christina James-Zorn, Virgilio G. Ponferrada, Chris Jarabek, Kevin A. Burns, Bishnu Bhattacharyya, Aaron M. Zorn, Peter D. Vize

Database J. Biol. Databases Curation, 2013

2012

Programming and evolving physical self-assembling systems in three dimensions.

Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob

Nat. Comput., 2012

2011

Staging the self-assembly process using morphological information.

Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob

Proceedings of the Advances in Artificial Life: 20th Anniversary Edition, 2011

2010

Xenbase: gene expression and improved integration.

Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Chris Jarabek, Kenan Azam, Aaron M. Zorn, Peter D. Vize

Nucleic Acids Res., 2010

2008

Xenbase: a <i>Xenopus</i> biology and genomics resource.

Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Ross Gibb, Chris Jarabek, Etienne Noumen, Nicolas Pollet, Peter D. Vize

Nucleic Acids Res., 2008

2005

A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns.

Victor E. Gerth, Peter D. Vize

Bioinform., 2005

2003

Interactive 3D gene expression viewer.

Victor E. Gerth, Peter D. Vize

Proceedings of the SIGGRAPH 2003 Conference on Web Graphics, 2003