Peter E. Midford

According to our database, Peter E. Midford authored at least 11 papers between 2004 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology.

Peter D. Karp, Peter E. Midford, Richard Billington, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Wai Kit Ong, Pallavi Subhraveti, Ron Caspi, Carol A. Fulcher, Ingrid M. Keseler, Suzanne M. Paley

Briefings Bioinform., 2021

2020

The MetaCyc database of metabolic pathways and enzymes - a 2019 update.

Ron Caspi, Richard Billington, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Peter E. Midford, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp

Nucleic Acids Res., 2020

Taxonomic weighting improves the accuracy of a gap-filling algorithm for metabolic models.

Wai Kit Ong, Peter E. Midford, Peter D. Karp

Bioinform., 2020

2019

The BioCyc collection of microbial genomes and metabolic pathways.

Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti

Briefings Bioinform., 2019

2018

The MetaCyc database of metabolic pathways and enzymes.

Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp

Nucleic Acids Res., 2018

2013

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena F. Deus, Brian Sidlauskas, Christian M. Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger A. Vos, Campbell O. Webb, Luke J. Harmon, Meg Pirrung, Brian C. O'Meara, Matthew W. Pennell, Siavash Mirarab, Michael S. Rosenberg, James P. Balhoff, Holly M. Bik, Tracy A. Heath, Peter E. Midford, Joseph W. Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E. Alfaro, Aaron Steele, Greg Jordan

BMC Bioinform., 2013

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.

Peter E. Midford, Thomas Dececchi, James P. Balhoff, Wasila M. Dahdul, Nizar Ibrahim, Hilmar Lapp, John G. Lundberg, Paula M. Mabee, Paul C. Sereno, Monte Westerfield, Todd J. Vision, David C. Blackburn

J. Biomed. Semant., 2013

2011

Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes.

Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Integrating Anatomy and Phenotype Ontologies with Taxonomic Hierarchies.

James P. Balhoff, Peter E. Midford, Hilmar Lapp

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Employing Reasoning within the Phenoscape Knowledgebase.

James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2004

Ontologies for Behavior.

Peter E. Midford

Bioinform., 2004