Peter G. Wolynes

According to our database, Peter G. Wolynes authored at least 14 papers between 1992 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

A structural dynamics model for how CPEB3 binding to SUMO2 can regulate translational control in dendritic spines.

Xinyu Gu, Nicholas P. Schafer, Carlos Bueno, Wei Lu, Peter G. Wolynes

PLoS Comput. Biol., November, 2022

A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networks.

Carlos Bueno, James Liman, Nicholas P. Schafer, Margaret S. Cheung, Peter G. Wolynes

PLoS Comput. Biol., 2022

2021

OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations.

Wei Lu, Carlos Bueno, Nicholas P. Schafer, Joshua Moller, Shikai Jin, Xun Chen, Mingchen Chen, Xinyu Gu, Aram Davtyan, Juan J. de Pablo, Peter G. Wolynes

PLoS Comput. Biol., 2021

The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome.

Vinícius G. Contessoto, Ryan R. Cheng, Arya Hajitaheri, Esteban Dodero-Rojas, Matheus F. Mello, Erez Lieberman Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic

Nucleic Acids Res., 2021

FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations.

Atilio O. Rausch, Maria I Freiberger, Cesar O. Leonetti, Diego M. Luna, Leandro G. Radusky, Peter G. Wolynes, Diego U. Ferreiro, R. Gonzalo Parra

Bioinform., 2021

2020

AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes.

Shikai Jin, Vinícius G. Contessoto, Mingchen Chen, Nicholas P. Schafer, Wei Lu, Xun Chen, Carlos Bueno, Arya Hajitaheri, Brian J. Sirovetz, Aram Davtyan, Garegin A. Papoian, Min-Yeh Tsai, Peter G. Wolynes

Nucleic Acids Res., 2020

2016

Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics.

R. Gonzalo Parra, Nicholas P. Schafer, Leandro G. Radusky, Min-Yeh Tsai, A. Brenda Guzovsky, Peter G. Wolynes, Diego U. Ferreiro

Nucleic Acids Res., 2016

2012

Protein frustratometer: a tool to localize energetic frustration in protein molecules.

Michael Jenik, R. Gonzalo Parra, Leandro G. Radusky, Adrian Gustavo Turjanski, Peter G. Wolynes, Diego U. Ferreiro

Nucleic Acids Res., 2012

2010

The Energy Landscape, Folding Pathways and the Kinetics of a Knotted Protein.

Michael C. Prentiss, David J. Wales, Peter G. Wolynes

PLoS Comput. Biol., 2010

2008

The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures.

Diego U. Ferreiro, Aleksandra M. Walczak, Elizabeth A. Komives, Peter G. Wolynes

PLoS Comput. Biol., 2008

2002

Folding funnels: The key to robust protein structure prediction.

Corey Hardin, Michael P. Eastwood, Michael C. Prentiss, Zaida Luthey-Schulten, Peter G. Wolynes

J. Comput. Chem., 2002

2001

Evaluating protein structure-prediction schemes using energy landscape theory.

Michael P. Eastwood, Corey Hardin, Zaida Luthey-Schulten, Peter G. Wolynes

IBM J. Res. Dev., 2001

1994

A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure Recognition.

Richard A. Goldstein, Zaida Luthey-Schulten, Peter G. Wolynes

Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

1992

Classification and Prediction of Protein Side-Chains by Neural Network Techniques.

J. Irwin, Henrik G. Bohr, K. Mochizuki, Peter G. Wolynes

Int. J. Neural Syst., 1992