Aleksandra M. Walczak

According to our database, Aleksandra M. Walczak authored at least 25 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Bayesian estimation of the Kullback-Leibler divergence for categorical sytems using mixtures of Dirichlet priors.

Francesco Camaglia, Ilya Nemenman, Thierry Mora, Aleksandra M. Walczak

CoRR, 2023

2022

Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies.

Cosimo Lupo, Natanael Spisak, Aleksandra M. Walczak, Thierry Mora

PLoS Comput. Biol., 2022

Disorder and the Neural Representation of Complex Odors.

Kamesh Krishnamurthy, Ann M. Hermundstad, Thierry Mora, Aleksandra M. Walczak, Vijay Balasubramanian

Frontiers Comput. Neurosci., 2022

2021

Optimal prediction with resource constraints using the information bottleneck.

Vedant Sachdeva, Thierry Mora, Aleksandra M. Walczak, Stephanie E. Palmer

PLoS Comput. Biol., 2021

Probing T-cell response by sequence-based probabilistic modeling.

Barbara Bravi, Vinod P. Balachandran, Benjamin D. Greenbaum, Aleksandra M. Walczak, Thierry Mora, Rémi Monasson, Simona Cocco

PLoS Comput. Biol., 2021

MINIMALIST: Mutual INformatIon Maximization for Amortized Likelihood Inference from Sampled Trajectories.

Giulio Isacchini, Natanael Spisak, Armita Nourmohammad, Thierry Mora, Aleksandra M. Walczak

CoRR, 2021

The Connection between Discrete- and Continuous-Time Descriptions of Gaussian Continuous Processes.

Federica Ferretti, Victor Chardès, Thierry Mora, Aleksandra M. Walczak, Irene Giardina

CoRR, 2021

2020

Inferring the immune response from repertoire sequencing.

Maximilian Puelma Touzel, Aleksandra M. Walczak, Thierry Mora

PLoS Comput. Biol., 2020

Population variability in the generation and selection of T-cell repertoires.

Zachary Sethna, Giulio Isacchini, Thomas Dupic, Thierry Mora, Aleksandra M. Walczak, Yuval Elhanati

PLoS Comput. Biol., 2020

SOS: online probability estimation and generation of T-and B-cell receptors.

Giulio Isacchini, Carlos Olivares, Armita Nourmohammad, Aleksandra M. Walczak, Thierry Mora

Bioinform., 2020

2019

Size and structure of the sequence space of repeat proteins.

Jacopo Marchi, Ezequiel A. Galpern, Rocío Espada, Diego U. Ferreiro, Aleksandra M. Walczak, Thierry Mora

PLoS Comput. Biol., 2019

Genesis of the αβ T-cell receptor.

Thomas Dupic, Quentin Marcou, Aleksandra M. Walczak, Thierry Mora

PLoS Comput. Biol., 2019

Dissipation in Non-Steady State Regulatory Circuits.

Paulina Szymanska-Rozek, Dario Villamaina, Jacek Miekisz, Aleksandra M. Walczak

Entropy, 2019

OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs.

Zachary Sethna, Yuval Elhanati, Jr Curtis G. Callan, Aleksandra M. Walczak, Thierry Mora

Bioinform., 2019

2018

Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern.

Huy Tran, Jonathan Desponds, Carmina Perez Romero, Mathieu Coppey, Cecile Fradin, Nathalie Dostatni, Aleksandra M. Walczak

PLoS Comput. Biol., 2018

Active degradation of MarA controls coordination of its downstream targets.

Nicholas A. Rossi, Thierry Mora, Aleksandra M. Walczak, Mary J. Dunlop

PLoS Comput. Biol., 2018

2017

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires.

Mikhail V. Pogorelyy, Yuval Elhanati, Quentin Marcou, Anastasiia L. Sycheva, Ekaterina Komech, Vadim I. Nazarov, Olga V. Britanova, Dmitry M. Chudakov, Ilgar Z. Mamedov, Yuri B. Lebedev, Thierry Mora, Aleksandra M. Walczak

PLoS Comput. Biol., 2017

Variable habitat conditions drive species covariation in the human microbiota.

Charles K. Fisher, Thierry Mora, Aleksandra M. Walczak

PLoS Comput. Biol., 2017

Inferring repeat-protein energetics from evolutionary information.

Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro

PLoS Comput. Biol., 2017

2016

Noise Expands the Response Range of the <i>Bacillus subtilis</i> Competence Circuit.

Andrew Mugler, Mark Kittisopikul, Luke Hayden, Jintao Liu, Chris H. Wiggins, Gürol M. Süel, Aleksandra M. Walczak

PLoS Comput. Biol., 2016

Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos.

Jonathan Desponds, Huy Tran, Teresa Ferraro, Tanguy Lucas, Carmina Perez Romero, Aurelien Guillou, Cecile Fradin, Mathieu Coppey, Nathalie Dostatni, Aleksandra M. Walczak

PLoS Comput. Biol., 2016

repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data.

Yuval Elhanati, Quentin Marcou, Thierry Mora, Aleksandra M. Walczak

Bioinform., 2016

2015

Capturing coevolutionary signals inrepeat proteins.

Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro

BMC Bioinform., 2015

2014

Flocking and turning: a new model for self-organized collective motion.

Andrea Cavagna, Lorenzo Del Castello, Irene Giardina, Tomas Grigera, Asja Jelic, Stefania Melillo, Thierry Mora, Leonardo Parisi, Edmondo Silvestri, Massimiliano Viale, Aleksandra M. Walczak

CoRR, 2014

2008

The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures.

Diego U. Ferreiro, Aleksandra M. Walczak, Elizabeth A. Komives, Peter G. Wolynes

PLoS Comput. Biol., 2008