Raul Rabadan

According to our database, Raul Rabadan authored at least 27 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Disentangling Interpretable Factors with Supervised Independent Subspace Principal Component Analysis.

Jiayu Su, David A. Knowles, Raul Rabadan

CoRR, 2024

2022

The Holdout Randomization Test for Feature Selection in Black Box Models.

Wesley Tansey, Victor Veitch, Haoran Zhang, Raul Rabadan, David M. Blei

J. Comput. Graph. Stat., 2022

2021

Topology identifies emerging adaptive mutations in SARS-CoV-2.

Michael Bleher, Lukas Hahn, Juan Ángel Patino-Galindo, Mathieu Carrière, Ulrich Bauer, Raul Rabadan, Andreas Ott

CoRR, 2021

2020

Quantifying Genetic Innovation: Mathematical Foundations for the Topological Study of Reticulate Evolution.

Michael Lesnick, Raúl Rabadán, Daniel I. S. Rosenbloom

SIAM J. Appl. Algebra Geom., 2020

A Random Matrix Theory Approach to Denoise Single-Cell Data.

Luis C. Aparicio, Mykola Bordyuh, Andrew J. Blumberg, Raul Rabadan

Patterns, 2020

MREC: a fast and versatile framework for aligning and matching point clouds with applications to single cell molecular data.

Andrew J. Blumberg, Mathieu Carrière, Michael A. Mandell, Raul Rabadan, Soledad Villar

CoRR, 2020

arcasHLA: high-resolution HLA typing from RNAseq.

Rose Orenbuch, Ioan Filip, Devon Comito, Jeffrey Shaman, Itsik Pe'er, Raul Rabadan

Bioinform., 2020

Persistent Homology Based Characterization of the Breast Cancer Immune Microenvironment: A Feasibility Study.

Andrew Aukerman, Mathieu Carrière, Chao Chen, Kevin Gardner, Raúl Rabadán, Rami Vanguri

Proceedings of the 36th International Symposium on Computational Geometry, 2020

2019

Longitudinal molecular trajectories of diffuse glioma in adults.

Floris P. Barthel, Kevin C. Johnson, Frederick S. Varn, Anzhela D. Moskalik, Georgette Tanner, Emre Kocakavuk, Kevin J. Anderson, Olajide Abiola, Kenneth D. Aldape, Kristin D. Alfaro, Donat Alpar, Samirkumar B. Amin, David M. Ashley, Pratiti Bandopadhayay, Jill S. Barnholtz-Sloan, Rameen Beroukhim, Christoph Bock, Priscilla K. Brastianos, Daniel J. Brat, Andrew R. Brodbelt, Alexander F. Bruns, Ketan R. Bulsara, Aruna Chakrabarty, Arnab Chakravarti, Jeffrey H. Chuang, Elizabeth B. Claus, Elizabeth J. Cochran, Jennifer Connelly, Joseph F. Costello, Gaetano Finocchiaro, Michael N. Fletcher, Pim J. French, Hui K. Gan, Mark R. Gilbert, Peter V. Gould, Matthew R. Grimmer, Antonio Iavarone, Azzam Ismail, Michael D. Jenkinson, Mustafa Khasraw, Hoon Kim, Mathilde C. M. Kouwenhoven, Peter S. LaViolette, Meihong Li, Peter Lichter, Keith L. Ligon, Allison K. Lowman, Tathiane M. Malta, Tali Mazor, Kerrie L. McDonald, Annette M. Molinaro, Do-Hyun Nam, Naema Nayyar, Ho Keung Ng, Chew Yee Ngan, Simone P. Niclou, Johanna M. Niers, Houtan Noushmehr, Javad Noorbakhsh, D. Ryan Ormond, Chul-Kee Park, Laila M. Poisson, Raul Rabadan, Bernhard Radlwimmer, Ganesh Rao, Guido Reifenberger, Jason K. Sa, Michael Schuster, Brian L. Shaw, Susan C. Short, Peter A. E. Sillevis Smitt, Andrew E. Sloan, Marion Smits, Hiromichi Suzuki, Ghazaleh Tabatabai, Erwin G. Van Meir, Colin Watts, Michael Weller, Pieter Wesseling, Bart A. Westerman, Georg Widhalm, Adelheid Woehrer, W. K. Alfred Yung, Gelareh Zadeh, Jason T. Huse, John F. De Groot, Lucy F. Stead, Roel G. W. Verhaak

Nat., 2019

2018

Topological Data Analysis of Single-cell Hi-C Contact Maps.

Mathieu Carrière, Raul Rabadan

CoRR, 2018

Black Box FDR.

Wesley Tansey, Yixin Wang, David M. Blei, Raul Rabadan

Proceedings of the 35th International Conference on Machine Learning, 2018

2016

Inference of Ancestral Recombination Graphs through Topological Data Analysis.

Pablo G. Cámara, Arnold J. Levine, Raúl Rabadán

PLoS Comput. Biol., 2016

A Theory of Taxonomy.

Guido D'Amico, Raul Rabadan, Matthew Kleban

CoRR, 2016

2015

A Fast Semi-Automatic Segmentation Tool for Processing Brain Tumor Images.

Andrew X. Chen, Raúl Rabadán

Proceedings of the Towards Integrative Machine Learning and Knowledge Extraction, 2015

Multiscale Topology of Chromatin Folding.

Kevin J. Emmett, Benjamin Schweinhart, Raul Rabadan

Proceedings of the BICT 2015, 2015

Quantifying Reticulation in Phylogenetic Complexes Using Homology.

Kevin J. Emmett, Raul Rabadan

Proceedings of the BICT 2015, 2015

2014

Darwin or Lamarck? Future Challenges in Evolutionary Algorithms for Knowledge Discovery and Data Mining.

Katharina Holzinger, Vasile Palade, Raul Rabadan, Andreas Holzinger

Proceedings of the Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, 2014

Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer.

Francesco Abate, Sakellarios Zairis, Elisa Ficarra, Andrea Acquaviva, Chris H. Wiggins, Veronique Frattini, Anna Lasorella, Antonio Iavarone, Giorgio Inghirami, Raul Rabadan

BMC Syst. Biol., 2014

Data-driven discovery of seasonally linked diseases from an Electronic Health Records system.

Rachel D. Melamed, Hossein Khiabanian, Raul Rabadan

BMC Bioinform., 2014

Darwin, Lamarck, or Baldwin: Applying Evolutionary Algorithms to Machine Learning Techniques.

Andreas Holzinger, David Blanchard, Marcus D. Bloice, Katharina Holzinger, Vasile Palade, Raul Rabadan

Proceedings of the 2014 IEEE/WIC/ACM International Joint Conferences on Web Intelligence (WI) and Intelligent Agent Technologies (IAT), Warsaw, Poland, August 11-14, 2014, 2014

Moduli Spaces of Phylogenetic Trees Describing Tumor Evolutionary Patterns.

Sakellarios Zairis, Hossein Khiabanian, Andrew J. Blumberg, Raul Rabadan

Proceedings of the Brain Informatics and Health - International Conference, 2014

Characterizing Scales of Genetic Recombination and Antibiotic Resistance in Pathogenic Bacteria Using Topological Data Analysis.

Kevin J. Emmett, Raul Rabadan

Proceedings of the Brain Informatics and Health - International Conference, 2014

2013

SAVI: a statistical algorithm for variant frequency identification.

Vladimir Trifonov, Laura Pasqualucci, Enrico Tiacci, Brunangelo Falini, Raul Rabadan

BMC Syst. Biol., 2013

MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples.

Vladimir Trifonov, Laura Pasqualucci, Riccardo Dalla Favera, Raul Rabadan

BMC Syst. Biol., 2013

2012

Drug-drug interaction through molecular structure similarity analysis.

Santiago Vilar, Rave Harpaz, Eugenio Uriarte, Lourdes Santana, Raul Rabadan, Carol Friedman

J. Am. Medical Informatics Assoc., 2012

2011

Facilitating adverse drug event detection in pharmacovigilance databases using molecular structure similarity: application to rhabdomyolysis.

Santiago Vilar, Rave Harpaz, Herbert S. Chase, Stefano Costanzi, Raul Rabadan, Carol Friedman

J. Am. Medical Informatics Assoc., 2011

2010

Network Analysis of Global Influenza Spread.

Joseph Chan, Antony Holmes, Raul Rabadan

PLoS Comput. Biol., 2010