Elisa Ficarra
Orcid: 0000-0002-8061-2124
According to our database1,
Elisa Ficarra
authored at least 90 papers
between 2002 and 2024.
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Bibliography
2024
A Graph-Based Multi-Scale Approach With Knowledge Distillation for WSI Classification.
IEEE Trans. Medical Imaging, April, 2024
Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2024
2023
BMC Bioinform., December, 2023
Predicting gene and protein expression levels from DNA and protein sequences with Perceiver.
Comput. Methods Programs Biomed., June, 2023
W2WNet: A two-module probabilistic Convolutional Neural Network with embedded data cleansing functionality.
Expert Syst. Appl., 2023
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023
Neuro-Symbolic Continual Learning: Knowledge, Reasoning Shortcuts and Concept Rehearsal.
Proceedings of the International Conference on Machine Learning, 2023
Proceedings of the Image Analysis and Processing - ICIAP 2023, 2023
Proceedings of the Image Analysis and Processing - ICIAP 2023, 2023
2022
J. Biomed. Informatics, 2022
Predicting gene expression levels from DNA sequences and post-transcriptional information with transformers.
Comput. Methods Programs Biomed., 2022
LaRA 2: parallel and vectorized program for sequence-structure alignment of RNA sequences.
BMC Bioinform., 2022
Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations.
BMC Bioinform., 2022
Proceedings of the Image Analysis and Processing. ICIAP 2022 Workshops, 2022
FusionFlow: An Integrated System Workflow for Gene Fusion Detection in Genomic Samples.
Proceedings of the New Trends in Database and Information Systems, 2022
2021
Optimizing Quality Inspection and Control in Powder Bed Metal Additive Manufacturing: Challenges and Research Directions.
Proc. IEEE, 2021
Eng. Appl. Artif. Intell., 2021
Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations: a COVID-19 case-study.
CoRR, 2021
PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity.
BMC Bioinform., 2021
Proceedings of the International Joint Conference on Neural Networks, 2021
2020
BioSeqZip: a collapser of NGS redundant reads for the optimization of sequence analysis.
Bioinform., 2020
Bioinform., 2020
Bioinform., 2020
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020
Proceedings of the Intelligent Computing Theories and Application, 2020
Proceedings of the Intelligent Computing Theories and Application, 2020
Proceedings of the ICBBE 2020: 7th International Conference on Biomedical and Bioinformatics Engineering, 2020
2018
Predicting the Oncogenic Potential of Gene Fusions Using Convolutional Neural Networks.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018
geneEx - A Novel Tool to Assess Differential Expression from Gene and Exon Sequencing Data.
Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018), 2018
Proceedings of the Biomedical Engineering Systems and Technologies, 2018
Colorectal Cancer Classification using Deep Convolutional Networks - An Experimental Study.
Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018), 2018
2017
FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples.
BMC Bioinform., 2017
A Novel Proof-of-concept Framework for the Exploitation of ConvNets on Whole Slide Images.
Proceedings of the Advances in Intelligent Information Hiding and Multimedia Signal Processing, 2017
A Multi-modal Brain Image Registration Framework for US-guided Neuronavigation Systems - Integrating MR and US for Minimally Invasive Neuroimaging.
Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2017), 2017
2016
ANAlyte: A modular image analysis tool for ANA testing with indirect immunofluorescence.
Comput. Methods Programs Biomed., 2016
isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation.
BMC Bioinform., 2016
Automated 3D immunofluorescence analysis of Dorsal Root Ganglia for the investigation of neural circuit alterations: a preliminary study.
Proceedings of the Position Papers of the 2016 Federated Conference on Computer Science and Information Systems, 2016
2015
An automated approach to the segmentation of HEp-2 cells for the indirect immunofluorescence ANA test.
Comput. Medical Imaging Graph., 2015
Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015
2014
Subclass Discriminant Analysis of morphological and textural features for HEp-2 staining pattern classification.
Pattern Recognit., 2014
FunMod: A Cytoscape Plugin for Identifying Functional Modules in Undirected Protein-Protein Networks.
Genom. Proteom. Bioinform., 2014
Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer.
BMC Syst. Biol., 2014
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014
A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer.
Proceedings of the BIOINFORMATICS 2014, 2014
Identifying Sub-Network Functional Modules in Protein Undirected Networks.
Proceedings of the BIOINFORMATICS 2014, 2014
2013
Gelsius: A Literature-Based Workflow for Determining Quantitative Associations between Genes and Biological Processes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
Integration of Literature with Heterogeneous Information for Genes Correlation Scoring.
ACM J. Emerg. Technol. Comput. Syst., 2013
J. Comput. Chem., 2013
A Novel Pipeline for V(D)J Junction Identification using RNA-Seq Paired-end Reads.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013
A Preliminary Analysis on HEp-2 Pattern Classification: Evaluating Strategies Based on Support Vector Machines and Subclass Discriminant Analysis.
Proceedings of the Biomedical Engineering Systems and Technologies, 2013
Classification of HEp-2 Staining Patterns in ImmunoFluorescence Images - Comparison of Support Vector Machines and Subclass Discriminant Analysis Strategies.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013
2012
Genom. Proteom. Bioinform., 2012
A Novel Gaussian Extrapolation Approach for 2D Gel Electrophoresis Saturated Protein Spots.
Genom. Proteom. Bioinform., 2012
Computer-aided techniques for chromogenic immunohistochemistry: Status and directions.
Comput. Biol. Medicine, 2012
Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model.
Bioinform., 2012
Applying textural features to the classification of HEp-2 cell patterns in IIF images.
Proceedings of the 21st International Conference on Pattern Recognition, 2012
Characterization of Coarse Grain Molecular Dynamic Simulation Performance on Graphic Processing Unit Architectures.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012
A Novel Gaussian Fitting Approach for 2D Gel Electrophoresis Saturated Protein Spots.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012
A Novel Analysis Flow for Fused Transcripts Discovery from Paired-end RNA-Seq Data.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012
2011
IEEE Trans. Biomed. Eng., 2011
Proceedings of the Design, Automation and Test in Europe, 2011
Binding Free Energy Calculation via Molecular Dynamics Simulations for a miRNA: mRNA Interaction.
Proceedings of the BIOINFORMATICS 2011, 2011
Improving Latent Semantic Analysis of Biomedical Literature Integrating UMLS Metathesaurus and Biomedical Pathways Databases.
Proceedings of the Biomedical Engineering Systems and Technologies, 2011
A New Latent Semantic Analysis based Methodology for Knowledge Extraction from Biomedical Literature and Biological Pathways Databases.
Proceedings of the BIOINFORMATICS 2011, 2011
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
A novel framework for chimeric transcript detection based on accurate gene fusion model.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
2010
Comput. Methods Programs Biomed., 2010
Achieving the way for automated segmentation of nuclei in cancer tissue images through morphology-based approach: A quantitative evaluation.
Comput. Medical Imaging Graph., 2010
MicroRNA Target Prediction and Exploration through Candidate Binding Sites Generation.
Proceedings of the CISIS 2010, 2010
An Automated Tool for Scoring Biomedical Terms Correlation Based on Semantic Analysis.
Proceedings of the CISIS 2010, 2010
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010
2009
Proceedings of the Biomedical Data and Applications, 2009
2008
Comput. Math. Appl., 2008
Automated Discrimination of Pathological Regions in Tissue Images: Unsupervised Clustering vs. Supervised SVM Classification.
Proceedings of the Biomedical Engineering Systems and Technologies, 2008
Fully-Automated Segmentation of Tumor Areas in Tissue Confocal Images - Comparison between a Custom Unsupervised and a Supervised SVM Approach.
Proceedings of the First International Conference on Biomedical Electronics and Devices, 2008
Segmentation of nuclei in cancer tissue images: Contrasting active contours with morphology-based approach.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008
2007
Selection of Tumor Areas and Segmentation of Nuclear Membranes in Tissue Confocal Images: A Fully Automated Approach.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
J. Integr. Bioinform., 2006
Int. J. Artif. Intell. Tools, 2006
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006
2005
IEEE Trans. Inf. Technol. Biomed., 2005
IEEE Trans. Biomed. Eng., 2005
2004
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004
2002
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002