Robert W. Shafer

According to our database, Robert W. Shafer authored at least 13 papers between 1999 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2017

NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequences.

Philip L. Tzou, Xiaoqiu Huang, Robert W. Shafer

BMC Bioinform., 2017

2011

A multifaceted analysis of HIV-1 protease multidrug resistance phenotypes.

Kathleen M. Doherty, Priyanka Nakka, Bracken M. King, Soo-Yon Rhee, Susan P. Holmes, Robert W. Shafer, Mala L. Radhakrishnan

BMC Bioinform., 2011

2010

Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape.

Kristof Theys, Koen Deforche, Gertjan Beheydt, Yves Moreau, Kristel Van Laethem, Philippe Lemey, Ricardo Camacho, Soo-Yon Rhee, Robert W. Shafer, Eric Van Wijngaerden, Anne-Mieke Vandamme

BMC Bioinform., 2010

A classification model for G-to-A hypermutation in hepatitis B virus ultra-deep pyrosequencing reads.

Elizabeth C. Reuman, Severine Margeridon-Thermet, Harrison B. Caudill, Tommy F. Liu, Katyna Borroto-Esoda, Evguenia S. Svarovskaia, Susan P. Holmes, Robert W. Shafer

Bioinform., 2010

2009

The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance.

Robert J. Gifford, Tommy F. Liu, Soo-Yon Rhee, Mark Kiuchi, Stéphane Hué, Deenan Pillay, Robert W. Shafer

Bioinform., 2009

2008

Viral Population Estimation Using Pyrosequencing.

Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, Soo-Yon Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel

PLoS Comput. Biol., 2008

2007

HIV-1 Subtype B Protease and Reverse Transcriptase Amino Acid Covariation.

Soo-Yon Rhee, Tommy F. Liu, Susan P. Holmes, Robert W. Shafer

PLoS Comput. Biol., 2007

2006

Prediction of HIV Mutation Changes based on Treatment History.

Ray S. Lin, Soo-Yon Rhee, Robert W. Shafer, Amar K. Das

Proceedings of the AMIA 2006, 2006

2003

Human immunodeficiency virus reverse transcriptase and protease sequence database.

Soo-Yon Rhee, Matthew J. Gonzales, Rami Kantor, Bradley J. Betts, Jaideep Ravela, Robert W. Shafer

Nucleic Acids Res., 2003

2002

Synonymous-non-synonymous mutation rates between sequences containing ambiguous nucleotides (Syn-SCAN).

Matthew J. Gonzales, Jonathan M. Dugan, Robert W. Shafer

Bioinform., 2002

2001

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database: an expanded data model integrating natural language text and sequence analysis programs.

Rami Kantor, Rhoderick Machekano, Matthew J. Gonzales, Kathryn Dupnik, Jonathan M. Schapiro, Robert W. Shafer

Nucleic Acids Res., 2001

2000

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database.

Robert W. Shafer, Duane R. Jung, Bradley J. Betts, Yinong Xi, Matthew J. Gonzales

Nucleic Acids Res., 2000

1999

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database.

Robert W. Shafer, Derek Stevenson, Bryan Chan

Nucleic Acids Res., 1999