Koen Deforche

According to our database, Koen Deforche authored at least 11 papers between 2005 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes.

Sara Cleemput, Wim Dumon, Vagner Fonseca, Wasim Abdool Karim, Marta Giovanetti, Luiz Carlos Alcantara, Koen Deforche, Tulio de Oliveira

Bioinform., 2020

2019

Genome Detective: an automated system for virus identification from high-throughput sequencing data.

Michael Vilsker, Yumna Moosa, Sam Nooij, Vagner Fonseca, Yoika Ghysens, Korneel Dumon, Raf Pauwels, Luiz Carlos Alcantara, Ewout Vanden Eynden, Anne-Mieke Vandamme, Koen Deforche, Tulio de Oliveira

Bioinform., 2019

VIRULIGN: fast codon-correct alignment and annotation of viral genomes.

Pieter J. K. Libin, Koen Deforche, Ana B. Abecasis, Kristof Theys

Bioinform., 2019

2013

RegaDB: community-driven data management and analysis for infectious diseases.

Pieter Libin, Gertjan Beheydt, Koen Deforche, Stijn Imbrechts, Fossie Ferreira, Kristel Van Laethem, Kristof Theys, Ana Patricia Carvalho, Joana Cavaco-Silva, Giuseppe Lapadula, Carlo Torti, Matthias Assel, Stefan Wesner, Joke Snoeck, Jean Ruelle, Annelies De Bel, Patrick Lacor, Paul De Munter, Eric Van Wijngaerden, Maurizio Zazzi, Rolf Kaiser, Ahidjo Ayouba, Martine Peeters, Tulio de Oliveira, Luiz Carlos Júnior Alcântara, Zehava Grossman, Peter M. A. Sloot, Dan Otelea, Simona Paraschiv, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme

Bioinform., 2013

2010

Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape.

Kristof Theys, Koen Deforche, Gertjan Beheydt, Yves Moreau, Kristel Van Laethem, Philippe Lemey, Ricardo Camacho, Soo-Yon Rhee, Robert W. Shafer, Eric Van Wijngaerden, Anne-Mieke Vandamme

BMC Bioinform., 2010

2009

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.

Luiz Carlos Júnior Alcântara, Sharon Cassol, Pieter Libin, Koen Deforche, Oliver G. Pybus, Marc Van Ranst, Bernardo Galvão-Castro, Anne-Mieke Vandamme, Tulio de Oliveira

Nucleic Acids Res., 2009

2008

Estimation of an <i>in vivo</i> fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment.

Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Philippe Lemey, Andrew Rambaut, Yves Moreau, Anne-Mieke Vandamme

Bioinform., 2008

2007

Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution <i>In Vivo</i>.

Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Beth Shapiro, Yves Moreau, Andrew Rambaut, Anne-Mieke Vandamme, Philippe Lemey

J. Comput. Biol., 2007

2006

Analysis of HIV-1 <i>pol</i> sequences using Bayesian Networks: implications for drug resistance.

Koen Deforche, Tomi Silander, Ricardo Camacho, Zehava Grossman, M. A. Soares, Kristel Van Laethem, Rami Kantor, Yves Moreau, Anne-Mieke Vandamme

Bioinform., 2006

2005

An automated genotyping system for analysis of HIV-1 and other microbial sequences.

Tulio de Oliveira, Koen Deforche, Sharon Cassol, Mika Salminen, Dimitris Paraskevis, Chris Seebregts, Joke Snoeck, Estrelita J. Janse van Rensburg, Annemarie M. J. Wensing, David A. van de Vijver, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme

Bioinform., 2005

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.

Dimitris Paraskevis, Koen Deforche, Philippe Lemey, Gkikas Magiorkinis, Angelos Hatzakis, Anne-Mieke Vandamme

Bioinform., 2005