Philippe Lemey

Orcid: 0000-0003-2826-5353

According to our database1, Philippe Lemey authored at least 25 papers between 2005 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Links

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Bibliography

2024
Many-core algorithms for high-dimensional gradients on phylogenetic trees.
Bioinform., February, 2024

2023
Accelerating Bayesian inference of dependency between mixed-type biological traits.
PLoS Comput. Biol., 2023

2021
Massive Parallelization Boosts Big Bayesian Multidimensional Scaling.
J. Comput. Graph. Stat., 2021

2020
Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region.
Bioinform., 2020

Deep Reinforcement Learning for Large-Scale Epidemic Control.
Proceedings of the Machine Learning and Knowledge Discovery in Databases. Applied Data Science and Demo Track, 2020

2018
Bayesian Best-Arm Identification for Selecting Influenza Mitigation Strategies.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2018

2017
Virus genomes reveal factors that spread and sustained the Ebola epidemic.
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Nat., 2017

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.
Bioinform., 2017

2016
SERAPHIM: studying environmental rasters and phylogenetically informed movements.
Bioinform., 2016

2015
Global circulation patterns of seasonal influenza viruses vary with antigenic drift.
Nat., 2015

2014
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates.
PLoS Comput. Biol., 2014

πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.
BMC Bioinform., 2014

2013
Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution.
BMC Bioinform., 2013

Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency.
Bioinform., 2013

Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2012
A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection.
Bioinform., 2012

2011
SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics.
Bioinform., 2011

2010
Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape.
BMC Bioinform., 2010

RDP3: a flexible and fast computer program for analyzing recombination.
Bioinform., 2010

2009
Bayesian Phylogeography Finds Its Roots.
PLoS Comput. Biol., 2009

Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning.
BMC Bioinform., 2009

2008
Estimation of an <i>in vivo</i> fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment.
Bioinform., 2008

2007
Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics.
PLoS Comput. Biol., 2007

Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution <i>In Vivo</i>.
J. Comput. Biol., 2007

2005
SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
Bioinform., 2005


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