Rong Chen

According to our database, Rong Chen authored at least 21 papers between 2006 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.

Khader Shameer, Benjamin S. Glicksberg, Rachel Hodos, Kipp W. Johnson, Marcus A. Badgeley, Ben Readhead, Max S. Tomlinson, Timothy O'Connor, Riccardo Miotto, Brian A. Kidd, Rong Chen, Avi Ma'ayan, Joel T. Dudley

Briefings Bioinform., 2018

Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders.

Milo R. Smith, Benjamin S. Glicksberg, Li Li, Rong Chen, Hirofumi Morishita, Joel T. Dudley

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

Automated disease cohort selection using word embeddings from Electronic Health Records.

Benjamin S. Glicksberg, Riccardo Miotto, Kipp W. Johnson, Khader Shameer, Li Li, Rong Chen, Joel T. Dudley

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2016

Integrating 400 million variants from 80, 000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts.

Jörg Hakenberg, Wei-Yi Cheng, Philippe Thomas, Ying-Chih Wang, Andrew V. Uzilov, Rong Chen

BMC Bioinform., 2016

Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks.

Benjamin S. Glicksberg, Li Li, Marcus A. Badgeley, Khader Shameer, Roman Kosoy, Noam D. Beckmann, Nam Pho, Jörg Hakenberg, Meng Ma, Kristin L. Ayers, Gabriel E. Hoffman, Shuyu Dan Li, Eric E. Schadt, Chirag J. Patel, Rong Chen, Joel T. Dudley

Bioinform., 2016

DIVAS: a centralized genetic variant repository representing 150 000 individuals from multiple disease cohorts.

Wei-Yi Cheng, Jörg Hakenberg, Shuyu Dan Li, Rong Chen

Bioinform., 2016

2015

An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships.

Benjamin S. Glicksberg, Li Li, Wei-Yi Cheng, Khader Shameer, Jörg Hakenberg, Rafael Castellanos, Meng Ma, Lisong Shi, Hardik Shah, Joel T. Dudley, Rong Chen

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2013

Systematic Identification of Risk Factors for Alzheimer's Disease Through Shared Genetic Architecture and Electronic Medical Records.

Li Li, David Ruau, Rong Chen, Susan C. Weber, Atul J. Butte

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012

Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases.

David Ruau, Joel Dudley, Rong Chen, Nicholas G. Phillips, Gary E. Swan, Laura Lazzeroni, J. David Clark, Atul J. Butte, Martin S. Angst

PLoS Comput. Biol., 2012

Clinical utility of sequence-based genotype compared with that derivable from genotyping arrays.

Alexander A. Morgan, Rong Chen, Atul J. Butte

J. Am. Medical Informatics Assoc., 2012

Data-driven integration of epidemiological and toxicological data to select candidate interacting genes and environmental factors in association with disease.

Chirag J. Patel, Rong Chen, Atul J. Butte

Bioinform., 2012

2011

ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.

Jesse M. Engreitz, Rong Chen, Alexander A. Morgan, Joel Dudley, Rohan Mallelwar, Atul J. Butte

Bioinform., 2011

Matching Cancer Genomes to Established Cell Lines for Personalized Oncology.

Joel Dudley, Rong Chen, Atul J. Butte

Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

The Reference Human Genome Demonstrates High Risk of Type 1 Diabetes and Other Disorders.

Rong Chen, Atul J. Butte

Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

2010

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets.

Silpa Suthram, Joel Dudley, Annie P. Chiang, Rong Chen, Trevor Hastie, Atul J. Butte

PLoS Comput. Biol., 2010

Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions.

Rong Chen, Tara K. Sigdel, Li Li, Neeraja Kambham, Joel Dudley, Szu-chuan Hsieh, R. Bryan Klassen, Amery Chen, Tuyen Caohuu, Alexander A. Morgan, Hannah A. Valantine, Kiran K. Khush, Minnie M. Sarwal, Atul J. Butte

PLoS Comput. Biol., 2010

Content-based microarray search using differential expression profiles.

Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte

BMC Bioinform., 2010

2009

Ontology-driven indexing of public datasets for translational bioinformatics.

Nigam H. Shah, Clément Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, Mark A. Musen

BMC Bioinform., 2009

2008

GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed.

Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul J. Butte

BMC Bioinform., 2008

2007

Methodologies for Extracting Functional Pharmacogenomic Experiments from International Repository.

Yi-An Lin, Annie P. Chiang, Ray Lin, Peggy Yao, Rong Chen, Atul J. Butte

Proceedings of the AMIA 2007, 2007

2006

Finding Disease-Related Genomic Experiments Within an International Repository: First Steps in Translational Bioinformatics.

Atul J. Butte, Rong Chen

Proceedings of the AMIA 2006, 2006