Alexander A. Morgan

According to our database, Alexander A. Morgan authored at least 29 papers between 2001 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Session Introduction.

Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Alexander A. Morgan, Predrag Radivojac, Nicholas P. Tatonetti

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2019

Session introduction.

Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jill P. Mesirov, Alexander A. Morgan, Predrag Radivojac

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2018

Session Introduction.

Dana C. Crawford, Alexander A. Morgan, Joshua C. Denny, Bruce J. Aronow, Steven E. Brenner

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2017

Session Introduction.

Alexander A. Morgan, Dana C. Crawford, Joshua C. Denny, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2016

Session Introduction.

Alexander A. Morgan, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner

Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

2014

Multiplex Meta-Analysis of Medulloblastoma Expression Studies with External Controls.

Alexander A. Morgan, Matthew D. Li, Achal S. Achrol, Purvesh Khatri, Samuel H. Cheshier

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2012

Multiplex meta-analysis of RNA expression to identify genes with variants associated with immune dysfunction.

Alexander A. Morgan, Vasilios J. Pyrgos, Kari C. Nadeau, Peter R. Williamson, Atul J. Butte

J. Am. Medical Informatics Assoc., 2012

Clinical utility of sequence-based genotype compared with that derivable from genotyping arrays.

Alexander A. Morgan, Rong Chen, Atul J. Butte

J. Am. Medical Informatics Assoc., 2012

2011

ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.

Jesse M. Engreitz, Rong Chen, Alexander A. Morgan, Joel Dudley, Rohan Mallelwar, Atul J. Butte

Bioinform., 2011

2010

Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions.

Rong Chen, Tara K. Sigdel, Li Li, Neeraja Kambham, Joel Dudley, Szu-chuan Hsieh, R. Bryan Klassen, Amery Chen, Tuyen Caohuu, Alexander A. Morgan, Hannah A. Valantine, Kiran K. Khush, Minnie M. Sarwal, Atul J. Butte

PLoS Comput. Biol., 2010

Validating pathophysiological models of aging using clinical electronic medical records.

David P. Chen, Alexander A. Morgan, Atul J. Butte

J. Biomed. Informatics, 2010

Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants.

Alexander A. Morgan, Purvesh Khatri, Richard Hayden Jones, Minnie M. Sarwal, Atul J. Butte

BMC Bioinform., 2010

Content-based microarray search using differential expression profiles.

Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte

BMC Bioinform., 2010

2009

Investigation of Unsupervised Pattern Learning Techniques for Bootstrap Construction of a Medical Treatment Lexicon.

Rong Xu, Alexander A. Morgan, Amar K. Das, Alan M. Garber

Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

2008

Unsupervised Method for Automatic Construction of a Disease Dictionary from a Large Free Text Collection.

Rong Xu, Kaustubh S. Supekar, Alex Morgan, Amar K. Das, Alan M. Garber

Proceedings of the AMIA 2008, 2008

2007

Research Paper: Rapidly Retargetable Approaches to De-identification in Medical Records.

Ben Wellner, Matt Huyck, Scott A. Mardis, John S. Aberdeen, Alexander A. Morgan, Leonid Peshkin, Alexander S. Yeh, Janet Hitzeman, Lynette Hirschman

J. Am. Medical Informatics Assoc., 2007

Automating document classification for the Immune Epitope Database.

Peng Wang, Alexander A. Morgan, Qing Zhang, Alessandro Sette, Björn Peters

BMC Bioinform., 2007

Evaluating the Automatic Mapping of Human Gene and Protein Mentions to Unique Identifiers.

Alexander A. Morgan, Benjamin Wellner, Jeffrey B. Colombe, Robert Arens, Marc E. Colosimo, Lynette Hirschman

Proceedings of the Biocomputing 2007, 2007

2005

BioCreAtIvE Task 1A: gene mention finding evaluation.

Alexander S. Yeh, Alexander A. Morgan, Marc E. Colosimo, Lynette Hirschman

BMC Bioinform., 2005

Overview of BioCreAtIvE task 1B: normalized gene lists.

Lynette Hirschman, Marc E. Colosimo, Alexander A. Morgan, Alexander S. Yeh

BMC Bioinform., 2005

Data preparation and interannotator agreement: BioCreAtIvE Task 1B.

Marc E. Colosimo, Alexander A. Morgan, Alexander S. Yeh, Jeffrey B. Colombe, Lynette Hirschman

BMC Bioinform., 2005

2004

Gene name identification and normalization using a model organism database.

Alexander A. Morgan, Lynette Hirschman, Marc E. Colosimo, Alexander S. Yeh, Jeffrey B. Colombe

J. Biomed. Informatics, 2004

2003

Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup.

Alexander S. Yeh, Lynette Hirschman, Alexander A. Morgan

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

Gene Name Extraction Using FlyBase Resources.

Alexander A. Morgan, Lynette Hirschman, Alexander S. Yeh, Marc E. Colosimo

Proceedings of the Workshop on Natural Language Processing in Biomedicine, 2003

2002

Background and Overview for KDD Cup 2002 Task 1: Information Extraction from Biomedical Articles.

Alexander S. Yeh, Lynette Hirschman, Alexander A. Morgan

SIGKDD Explor., 2002

Rutabaga by any other name: extracting biological names.

Lynette Hirschman, Alexander A. Morgan, Alexander S. Yeh

J. Biomed. Informatics, 2002

MITRE's Qanda at TREC-11.

John D. Burger, Lisa Ferro, Warren R. Greiff, John C. Henderson, Scott A. Mardis, Alexander A. Morgan, Marc Light

Proceedings of The Eleventh Text REtrieval Conference, 2002

2001

Qanda and the Catalyst Architecture.

Pranav Anand, David Anderson, John D. Burger, John Griffith, Marc Light, Scott A. Mardis, Alexander A. Morgan

Proceedings of The Tenth Text REtrieval Conference, 2001

Fine-Grained Hidden Markov Modeling for Broadcast-News Story Segmentation.

Warren R. Greiff, Alex Morgan, Randall K. Fish, Marc Richards, Amlan Kundu

Proceedings of the First International Conference on Human Language Technology Research, 2001